Analysis of interatomic Contacts of Structural Units in PDB entry:
6OJL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OJL entry

There is 1 chain in PDB entry 6OJL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 27PRO 568
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6OJL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 43Right-handed alpha
Helix 2
AA2
A
82 85Right-handed 310
Helix 3
AA3
A
86 101Right-handed alpha
Helix 4
AA4
A
103 120Right-handed alpha
Helix 5
AA5
A
160 168Right-handed alpha
Helix 6
AA6
A
168 183Right-handed alpha
Helix 7
AA7
A
204 208Right-handed 310
Helix 8
AA8
A
224 243Right-handed alpha
Helix 9
AA9
A
244 258Right-handed alpha
Helix 10
AB1
A
289 293Right-handed 310
Helix 11
AB2
A
294 305Right-handed alpha
Helix 12
AB3
A
309 311Right-handed 310
Helix 13
AB4
A
317 324Right-handed alpha
Helix 14
AB5
A
324 337Right-handed alpha
Helix 15
AB6
A
338 340Right-handed 310
Helix 16
AB7
A
341 359Right-handed alpha
Helix 17
AB8
A
401 415Right-handed alpha
Helix 18
AB9
A
417 431Right-handed alpha
Helix 19
AC1
A
454 469Right-handed alpha
Helix 20
AC2
A
470 488Right-handed alpha
Helix 21
AC3
A
508 521Right-handed alpha
Helix 22
AC4
A
523 527Right-handed 310
Helix 23
AC5
A
554 560Right-handed alpha
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There are 10 sheets in PDB entry 6OJL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
503 504anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
A
77 81anti-parallel
Strand 3
A
134 136anti-parallel
Strand 4
A
142 143anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 186first strand
Strand 2
A
191 192anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 219first strand
Strand 2
A
274 276parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 314first strand
Strand 2
A
370 371anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
366 367anti-parallel
Strand 3
A
398 399anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 381first strand
Strand 2
A
394 395anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 435first strand
Strand 2
A
445 446anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 490first strand
Strand 2
A
493 494anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 542first strand
Strand 2
A
548 553anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il