Analysis of interatomic Contacts of Structural Units in PDB entry:
6OJM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OJM entry

There are 5 chains in PDB entry 6OJM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 278
B	MET 1	SER 278
C	MET 1	SER 278
D	MET 1	SER 278
E	MET 1	GLU 202

There are 74 helices in PDB entry 6OJM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	A	36	53	Right-handed alpha
Helix 3	AA3	A	99	110	Right-handed alpha
Helix 4	AA4	A	124	133	Right-handed alpha
Helix 5	AA5	A	148	152	Right-handed 310
Helix 6	AA6	A	164	169	Right-handed alpha
Helix 7	AA7	A	169	180	Right-handed alpha
Helix 8	AA8	A	185	192	Right-handed alpha
Helix 9	AA9	A	199	201	Right-handed 310
Helix 10	AB1	A	202	216	Right-handed alpha
Helix 11	AB2	A	218	252	Right-handed alpha
Helix 12	AB3	A	253	265	Right-handed alpha
Helix 13	AB4	B	28	32	Right-handed 310
Helix 14	AB5	B	36	53	Right-handed alpha
Helix 15	AB6	B	80	82	Right-handed 310
Helix 16	AB7	B	99	110	Right-handed alpha
Helix 17	AB8	B	124	133	Right-handed alpha
Helix 18	AB9	B	148	152	Right-handed 310
Helix 19	AC1	B	164	169	Right-handed alpha
Helix 20	AC2	B	169	180	Right-handed alpha
Helix 21	AC3	B	185	191	Right-handed alpha
Helix 22	AC4	B	199	201	Right-handed 310
Helix 23	AC5	B	202	216	Right-handed alpha
Helix 24	AC6	B	218	252	Right-handed alpha
Helix 25	AC7	B	253	266	Right-handed alpha
Helix 26	AC8	C	28	32	Right-handed 310
Helix 27	AC9	C	36	53	Right-handed alpha
Helix 28	AD1	C	99	110	Right-handed alpha
Helix 29	AD2	C	124	133	Right-handed alpha
Helix 30	AD3	C	148	152	Right-handed 310
Helix 31	AD4	C	161	169	Right-handed alpha
Helix 32	AD5	C	169	180	Right-handed alpha
Helix 33	AD6	C	185	192	Right-handed alpha
Helix 34	AD7	C	199	201	Right-handed 310
Helix 35	AD8	C	202	216	Right-handed alpha
Helix 36	AD9	C	218	252	Right-handed alpha
Helix 37	AE1	C	253	265	Right-handed alpha
Helix 38	AE2	D	28	32	Right-handed 310
Helix 39	AE3	D	36	53	Right-handed alpha
Helix 40	AE4	D	100	110	Right-handed alpha
Helix 41	AE5	D	124	133	Right-handed alpha
Helix 42	AE6	D	148	152	Right-handed 310
Helix 43	AE7	D	164	169	Right-handed alpha
Helix 44	AE8	D	169	180	Right-handed alpha
Helix 45	AE9	D	185	191	Right-handed alpha
Helix 46	AF1	D	199	201	Right-handed 310
Helix 47	AF2	D	202	216	Right-handed alpha
Helix 48	AF3	D	218	252	Right-handed alpha
Helix 49	AF4	D	253	265	Right-handed alpha
Helix 50	AF5	E	28	32	Right-handed 310
Helix 51	AF6	E	36	53	Right-handed alpha
Helix 52	AF7	E	99	110	Right-handed alpha
Helix 53	AF8	E	124	133	Right-handed alpha
Helix 54	AF9	E	148	152	Right-handed 310
Helix 55	AG1	E	164	169	Right-handed alpha
Helix 56	AG2	E	169	180	Right-handed alpha
Helix 57	AG3	E	185	191	Right-handed alpha
Helix 58	AG4	E	199	201	Right-handed 310
Helix 59	AG5	E	202	216	Right-handed alpha
Helix 60	AG6	E	218	252	Right-handed alpha
Helix 61	AG7	E	253	265	Right-handed alpha
Helix 62	AG8	F	28	32	Right-handed 310
Helix 63	AG9	F	36	53	Right-handed alpha
Helix 64	AH1	F	80	82	Right-handed 310
Helix 65	AH2	F	99	110	Right-handed alpha
Helix 66	AH3	F	124	133	Right-handed alpha
Helix 67	AH4	F	148	152	Right-handed 310
Helix 68	AH5	F	164	169	Right-handed alpha
Helix 69	AH6	F	169	180	Right-handed alpha
Helix 70	AH7	F	185	191	Right-handed alpha
Helix 71	AH8	F	199	201	Right-handed 310
Helix 72	AH9	F	202	216	Right-handed alpha
Helix 73	AI1	F	218	252	Right-handed alpha
Helix 74	AI2	F	253	265	Right-handed alpha

There are 14 sheets in PDB entry 6OJM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	8	first strand
Strand 2	A	13	18	anti-parallel
Strand 3	A	21	26	anti-parallel
Strand 4	A	58	63	parallel
Strand 5	A	113	118	parallel
Strand 6	A	135	139	parallel
Strand 7	A	196	198	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	76	first strand
Strand 2	A	121	123	parallel
Strand 3	A	144	146	parallel
Strand 4	A	182	184	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	8	first strand
Strand 2	B	13	18	anti-parallel
Strand 3	B	21	26	anti-parallel
Strand 4	B	58	63	parallel
Strand 5	B	113	118	parallel
Strand 6	B	135	139	parallel
Strand 7	B	196	198	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	76	first strand
Strand 2	B	121	123	parallel
Strand 3	B	144	146	parallel
Strand 4	B	182	184	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	88	90	anti-parallel
Strand 3	B	96	97	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	9	first strand
Strand 2	C	13	18	anti-parallel
Strand 3	C	21	26	anti-parallel
Strand 4	C	58	63	parallel
Strand 5	C	113	118	parallel
Strand 6	C	135	139	parallel
Strand 7	C	196	198	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	76	first strand
Strand 2	C	121	123	parallel
Strand 3	C	144	146	parallel
Strand 4	C	182	184	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	13	18	anti-parallel
Strand 3	D	21	26	anti-parallel
Strand 4	D	58	63	parallel
Strand 5	D	113	118	parallel
Strand 6	D	135	139	parallel
Strand 7	D	196	198	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	76	first strand
Strand 2	D	121	123	parallel
Strand 3	D	144	146	parallel
Strand 4	D	183	184	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	6	first strand
Strand 2	E	13	18	anti-parallel
Strand 3	E	21	26	anti-parallel
Strand 4	E	58	63	parallel
Strand 5	E	113	118	parallel
Strand 6	E	135	139	parallel
Strand 7	E	196	198	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	76	first strand
Strand 2	E	121	123	parallel
Strand 3	E	144	146	parallel
Strand 4	E	182	184	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	6	first strand
Strand 2	F	13	18	anti-parallel
Strand 3	F	21	26	anti-parallel
Strand 4	F	58	63	parallel
Strand 5	F	113	118	parallel
Strand 6	F	135	139	parallel
Strand 7	F	196	198	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	74	76	first strand
Strand 2	F	121	123	parallel
Strand 3	F	144	146	parallel
Strand 4	F	182	184	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	85	first strand
Strand 2	F	88	90	anti-parallel
Strand 3	F	96	97	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OJM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OJM