Analysis of interatomic Contacts of Structural Units in PDB entry:
6OJN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OJN entry

There are 3 chains in PDB entry 6OJN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 41	LEU 463
B	TYR 41	LEU 463
C	TYR 41	LEU 463

There are 21 helices in PDB entry 6OJN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	109	114	Right-handed alpha
Helix 2	AA2	A	131	137	Right-handed alpha
Helix 3	AA3	A	145	151	Right-handed alpha
Helix 4	AA4	A	257	265	Right-handed alpha
Helix 5	AA5	A	338	342	Right-handed 310
Helix 6	AA6	A	361	366	Right-handed alpha
Helix 7	AA7	A	367	372	Right-handed alpha
Helix 8	AA8	B	109	114	Right-handed alpha
Helix 9	AA9	B	131	137	Right-handed alpha
Helix 10	AB1	B	145	151	Right-handed alpha
Helix 11	AB2	B	257	265	Right-handed alpha
Helix 12	AB3	B	338	342	Right-handed 310
Helix 13	AB4	B	361	366	Right-handed alpha
Helix 14	AB5	B	367	373	Right-handed alpha
Helix 15	AB6	C	109	114	Right-handed alpha
Helix 16	AB7	C	131	137	Right-handed alpha
Helix 17	AB8	C	145	151	Right-handed alpha
Helix 18	AB9	C	257	265	Right-handed alpha
Helix 19	AC1	C	338	342	Right-handed 310
Helix 20	AC2	C	361	366	Right-handed alpha
Helix 21	AC3	C	367	372	Right-handed alpha

There are 16 sheets in PDB entry 6OJN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	57	first strand
Strand 2	A	65	69	anti-parallel
Strand 3	A	207	211	anti-parallel
Strand 4	A	116	121	anti-parallel
Strand 5	A	124	130	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	81	first strand
Strand 2	A	250	251	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	180	181	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	280	first strand
Strand 2	A	440	452	anti-parallel
Strand 3	A	301	310	anti-parallel
Strand 4	A	383	385	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	280	first strand
Strand 2	A	440	452	anti-parallel
Strand 3	A	301	310	anti-parallel
Strand 4	A	401	402	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	295	first strand
Strand 2	A	410	413	anti-parallel
Strand 3	A	347	349	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	57	first strand
Strand 2	B	65	69	anti-parallel
Strand 3	B	207	211	anti-parallel
Strand 4	B	116	121	anti-parallel
Strand 5	B	124	130	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	184	first strand
Strand 2	B	77	84	anti-parallel
Strand 3	B	250	253	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	280	first strand
Strand 2	B	442	452	anti-parallel
Strand 3	B	301	308	anti-parallel
Strand 4	B	383	385	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	280	first strand
Strand 2	B	442	452	anti-parallel
Strand 3	B	301	308	anti-parallel
Strand 4	B	401	402	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	295	first strand
Strand 2	B	410	413	anti-parallel
Strand 3	B	347	349	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	57	first strand
Strand 2	C	65	69	anti-parallel
Strand 3	C	207	211	anti-parallel
Strand 4	C	116	121	anti-parallel
Strand 5	C	124	130	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	184	first strand
Strand 2	C	77	84	anti-parallel
Strand 3	C	250	253	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	280	first strand
Strand 2	C	440	453	anti-parallel
Strand 3	C	301	310	anti-parallel
Strand 4	C	383	385	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	280	first strand
Strand 2	C	440	453	anti-parallel
Strand 3	C	301	310	anti-parallel
Strand 4	C	401	402	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	295	first strand
Strand 2	C	410	415	anti-parallel
Strand 3	C	344	349	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OJN

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OJN