Analysis of interatomic Contacts of Structural Units in PDB entry:
6OJT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OJT entry

There are 2 chains in PDB entry 6OJT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 2	ALA 482
A	ALA 2	ALA 482

There are 20 helices in PDB entry 6OJT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	7	15	Right-handed 310
Helix 2	AA2	B	57	61	Right-handed 310
Helix 3	AA3	B	84	94	Right-handed alpha
Helix 4	AA4	B	103	107	Right-handed 310
Helix 5	AA5	B	108	112	Right-handed 310
Helix 6	AA6	B	237	243	Right-handed alpha
Helix 7	AA7	B	266	270	Right-handed 310
Helix 8	AA8	B	356	359	Right-handed 310
Helix 9	AA9	B	452	456	Right-handed 310
Helix 10	AB1	B	479	482	Right-handed 310
Helix 11	AB2	A	7	15	Right-handed 310
Helix 12	AB3	A	57	61	Right-handed 310
Helix 13	AB4	A	84	94	Right-handed alpha
Helix 14	AB5	A	103	107	Right-handed 310
Helix 15	AB6	A	108	112	Right-handed 310
Helix 16	AB7	A	237	243	Right-handed alpha
Helix 17	AB8	A	266	270	Right-handed 310
Helix 18	AB9	A	356	359	Right-handed 310
Helix 19	AC1	A	452	456	Right-handed 310
Helix 20	AC2	A	479	481	Right-handed 310

There are 19 sheets in PDB entry 6OJT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	474	477	first strand
Strand 2	B	37	45	anti-parallel
Strand 3	B	63	71	anti-parallel
Strand 4	B	74	81	anti-parallel
Strand 5	B	20	23	anti-parallel
Strand 6	A	20	23	anti-parallel
Strand 7	A	74	81	anti-parallel
Strand 8	A	63	71	anti-parallel
Strand 9	A	37	45	anti-parallel
Strand 10	A	474	477	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	30	first strand
Strand 2	B	459	462	anti-parallel
Strand 3	B	442	449	anti-parallel
Strand 4	B	429	437	anti-parallel
Strand 5	B	410	412	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	30	first strand
Strand 2	B	459	462	anti-parallel
Strand 3	B	442	449	anti-parallel
Strand 4	B	429	437	anti-parallel
Strand 5	B	416	419	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	126	first strand
Strand 2	B	129	133	anti-parallel
Strand 3	B	140	142	anti-parallel
Strand 4	B	149	152	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	177	182	anti-parallel
Strand 3	B	191	197	anti-parallel
Strand 4	B	203	210	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	226	231	anti-parallel
Strand 3	B	256	262	anti-parallel
Strand 4	B	271	275	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	235	first strand
Strand 2	B	249	250	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	280	first strand
Strand 2	B	292	300	anti-parallel
Strand 3	B	285	289	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	280	first strand
Strand 2	B	292	300	anti-parallel
Strand 3	B	323	330	anti-parallel
Strand 4	B	340	343	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	354	first strand
Strand 2	B	365	370	anti-parallel
Strand 3	B	390	395	anti-parallel
Strand 4	B	401	405	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	30	first strand
Strand 2	A	459	462	anti-parallel
Strand 3	A	442	449	anti-parallel
Strand 4	A	429	437	anti-parallel
Strand 5	A	410	412	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	30	first strand
Strand 2	A	459	462	anti-parallel
Strand 3	A	442	449	anti-parallel
Strand 4	A	429	437	anti-parallel
Strand 5	A	416	419	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	126	first strand
Strand 2	A	129	133	anti-parallel
Strand 3	A	140	142	anti-parallel
Strand 4	A	149	152	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	177	182	anti-parallel
Strand 3	A	191	197	anti-parallel
Strand 4	A	203	210	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	226	231	anti-parallel
Strand 3	A	256	262	anti-parallel
Strand 4	A	271	275	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	235	first strand
Strand 2	A	249	250	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	280	first strand
Strand 2	A	292	300	anti-parallel
Strand 3	A	285	289	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	280	first strand
Strand 2	A	292	300	anti-parallel
Strand 3	A	323	330	anti-parallel
Strand 4	A	340	343	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	354	first strand
Strand 2	A	365	370	anti-parallel
Strand 3	A	390	395	anti-parallel
Strand 4	A	401	405	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OJT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OJT