Analysis of interatomic Contacts of Structural Units in PDB entry:
6OK1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OK1 entry

There are 3 chains in PDB entry 6OK1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3ARG 394
B
 MET 187GLU 317
C
 SER 2ALA 156
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6OK1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 41Right-handed alpha
Helix 2
AA2
A
44 48Right-handed 310
Helix 3
AA3
A
60 69Right-handed alpha
Helix 4
AA4
A
81 84Right-handed 310
Helix 5
AA5
A
85 99Right-handed alpha
Helix 6
AA6
A
131 136Right-handed alpha
Helix 7
AA7
A
137 144Right-handed 310
Helix 8
AA8
A
147 164Right-handed alpha
Helix 9
AA9
A
166 183Right-handed alpha
Helix 10
AB1
A
195 202Right-handed alpha
Helix 11
AB2
A
212 214Right-handed 310
Helix 12
AB3
A
229 233Right-handed alpha
Helix 13
AB4
A
267 282Right-handed alpha
Helix 14
AB5
A
284 288Right-handed 310
Helix 15
AB6
A
300 308Right-handed alpha
Helix 16
AB7
A
315 322Right-handed alpha
Helix 17
AB8
A
337 342Right-handed alpha
Helix 18
AB9
A
347 360Right-handed alpha
Helix 19
AC1
B
195 204Right-handed alpha
Helix 20
AC2
B
284 288Right-handed 310
Helix 21
AC3
C
25 41Right-handed alpha
Helix 22
AC4
C
44 48Right-handed 310
Helix 23
AC5
C
60 69Right-handed alpha
Helix 24
AC6
C
81 84Right-handed 310
Helix 25
AC7
C
85 99Right-handed alpha
Helix 26
AC8
C
131 136Right-handed alpha
Helix 27
AC9
C
137 144Right-handed 310
Helix 28
AD1
C
147 164Right-handed alpha
Helix 29
AD2
C
166 183Right-handed alpha
Helix 30
AD3
C
195 202Right-handed alpha
Helix 31
AD4
C
212 214Right-handed 310
Helix 32
AD5
C
229 233Right-handed alpha
Helix 33
AD6
C
267 282Right-handed alpha
Helix 34
AD7
C
284 288Right-handed 310
Helix 35
AD8
C
300 308Right-handed alpha
Helix 36
AD9
C
315 322Right-handed alpha
Helix 37
AE1
C
337 342Right-handed alpha
Helix 38
AE2
C
347 360Right-handed alpha
Helix 39
AE3
D
195 204Right-handed alpha
Helix 40
AE4
D
284 288Right-handed 310
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There are 8 sheets in PDB entry 6OK1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 79first strand
Strand 2
A
50 54parallel
Strand 3
A
104 112parallel
Strand 4
A
219 228anti-parallel
Strand 5
A
8 15anti-parallel
Strand 6
A
240 248anti-parallel
Strand 7
A
382 388anti-parallel
Strand 8
A
371 375anti-parallel
Strand 9
A
290 292parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
204 207anti-parallel
Strand 3
B
242 251anti-parallel
Strand 4
B
263 270anti-parallel
Strand 5
B
275 279anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
204 207anti-parallel
Strand 3
B
242 251anti-parallel
Strand 4
B
293 302anti-parallel
Strand 5
B
305 312anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 219first strand
Strand 2
B
208 212anti-parallel
Strand 3
B
234 238anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 79first strand
Strand 2
C
50 54parallel
Strand 3
C
104 112parallel
Strand 4
C
219 228anti-parallel
Strand 5
C
8 15anti-parallel
Strand 6
C
240 248anti-parallel
Strand 7
C
382 388anti-parallel
Strand 8
C
371 375anti-parallel
Strand 9
C
290 292parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
209 210first strand
Strand 2
C
204 207anti-parallel
Strand 3
D
242 251anti-parallel
Strand 4
D
263 270anti-parallel
Strand 5
D
275 279anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
209 210first strand
Strand 2
C
204 207anti-parallel
Strand 3
D
242 251anti-parallel
Strand 4
D
293 302anti-parallel
Strand 5
D
305 312anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
218 219first strand
Strand 2
D
208 212anti-parallel
Strand 3
D
234 238anti-parallel
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