Analysis of interatomic Contacts of Structural Units in PDB entry:
6OK4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OK4 entry

There are 4 chains in PDB entry 6OK4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
HIS -1ASN 332
B
HIS 0ASN 332
C
HIS -1ASN 332
D
HIS -1ASN 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 6OK4. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
9 22Right-handed alpha
Helix 2
AA2
A
36 46Right-handed alpha
Helix 3
AA3
A
101 111Right-handed alpha
Helix 4
AA4
A
134 138Right-handed 310
Helix 5
AA5
A
149 167Right-handed alpha
Helix 6
AA6
A
194 198Right-handed 310
Helix 7
AA7
A
210 219Right-handed alpha
Helix 8
AA8
A
220 223Right-handed 310
Helix 9
AA9
A
252 266Right-handed alpha
Helix 10
AB1
A
280 285Right-handed 310
Helix 11
AB2
A
315 331Right-handed alpha
Helix 12
AB3
B
9 22Right-handed alpha
Helix 13
AB4
B
36 46Right-handed alpha
Helix 14
AB5
B
101 111Right-handed alpha
Helix 15
AB6
B
134 138Right-handed 310
Helix 16
AB7
B
149 166Right-handed alpha
Helix 17
AB8
B
193 198Right-handed 310
Helix 18
AB9
B
210 219Right-handed alpha
Helix 19
AC1
B
220 223Right-handed 310
Helix 20
AC2
B
252 266Right-handed alpha
Helix 21
AC3
B
280 285Right-handed 310
Helix 22
AC4
B
315 331Right-handed alpha
Helix 23
AC5
C
9 22Right-handed alpha
Helix 24
AC6
C
36 46Right-handed alpha
Helix 25
AC7
C
101 111Right-handed alpha
Helix 26
AC8
C
134 138Right-handed 310
Helix 27
AC9
C
149 167Right-handed alpha
Helix 28
AD1
C
193 198Right-handed 310
Helix 29
AD2
C
210 219Right-handed alpha
Helix 30
AD3
C
220 223Right-handed 310
Helix 31
AD4
C
252 266Right-handed alpha
Helix 32
AD5
C
280 285Right-handed 310
Helix 33
AD6
C
315 331Right-handed alpha
Helix 34
AD7
D
9 22Right-handed alpha
Helix 35
AD8
D
36 46Right-handed alpha
Helix 36
AD9
D
83 88Right-handed alpha
Helix 37
AE1
D
101 111Right-handed alpha
Helix 38
AE2
D
134 138Right-handed 310
Helix 39
AE3
D
149 166Right-handed alpha
Helix 40
AE4
D
194 198Right-handed 310
Helix 41
AE5
D
210 219Right-handed alpha
Helix 42
AE6
D
220 223Right-handed 310
Helix 43
AE7
D
252 266Right-handed alpha
Helix 44
AE8
D
280 285Right-handed 310
Helix 45
AE9
D
315 331Right-handed alpha
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There are 12 sheets in PDB entry 6OK4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
58 60first strand
Strand 2
A
63 66anti-parallel
Strand 3
A
69 74anti-parallel
Strand 4
A
27 32parallel
Strand 5
A
2 6parallel
Strand 6
A
91 94parallel
Strand 7
A
115 118parallel
Strand 8
A
144 146parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
205 207first strand
Strand 2
A
226 233anti-parallel
Strand 3
A
168 178parallel
Strand 4
A
239 247anti-parallel
Strand 5
A
305 312anti-parallel
Strand 6
A
291 294anti-parallel
Strand 7
A
272 275parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
205 207first strand
Strand 2
A
226 233anti-parallel
Strand 3
A
168 178parallel
Strand 4
A
239 247anti-parallel
Strand 5
A
305 312anti-parallel
Strand 6
A
299 300anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
58 60first strand
Strand 2
B
63 66anti-parallel
Strand 3
B
69 74anti-parallel
Strand 4
B
27 32parallel
Strand 5
B
2 6parallel
Strand 6
B
91 94parallel
Strand 7
B
115 118parallel
Strand 8
B
144 146parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
205 207first strand
Strand 2
B
226 233anti-parallel
Strand 3
B
168 178parallel
Strand 4
B
239 247anti-parallel
Strand 5
B
305 312anti-parallel
Strand 6
B
291 294anti-parallel
Strand 7
B
272 275parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
205 207first strand
Strand 2
B
226 233anti-parallel
Strand 3
B
168 178parallel
Strand 4
B
239 247anti-parallel
Strand 5
B
305 312anti-parallel
Strand 6
B
299 300anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
58 60first strand
Strand 2
C
63 66anti-parallel
Strand 3
C
69 74anti-parallel
Strand 4
C
27 32parallel
Strand 5
C
2 6parallel
Strand 6
C
91 94parallel
Strand 7
C
116 118parallel
Strand 8
C
144 146parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
205 207first strand
Strand 2
C
226 233anti-parallel
Strand 3
C
168 178parallel
Strand 4
C
239 247anti-parallel
Strand 5
C
305 312anti-parallel
Strand 6
C
291 294anti-parallel
Strand 7
C
272 275parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
205 207first strand
Strand 2
C
226 233anti-parallel
Strand 3
C
168 178parallel
Strand 4
C
239 247anti-parallel
Strand 5
C
305 312anti-parallel
Strand 6
C
299 300anti-parallel
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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
58 60first strand
Strand 2
D
63 66anti-parallel
Strand 3
D
69 74anti-parallel
Strand 4
D
27 32parallel
Strand 5
D
2 6parallel
Strand 6
D
91 94parallel
Strand 7
D
115 118parallel
Strand 8
D
144 146parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
205 207first strand
Strand 2
D
226 233anti-parallel
Strand 3
D
168 178parallel
Strand 4
D
239 247anti-parallel
Strand 5
D
305 312anti-parallel
Strand 6
D
291 294anti-parallel
Strand 7
D
272 275parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
205 207first strand
Strand 2
D
226 233anti-parallel
Strand 3
D
168 178parallel
Strand 4
D
239 247anti-parallel
Strand 5
D
305 312anti-parallel
Strand 6
D
299 300anti-parallel
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