Analysis of interatomic Contacts of Structural Units in PDB entry:
6OKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OKD entry

There are 4 chains in PDB entry 6OKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ASP 637
B
 ARG 3ASP 637
C
 ARG 3GLN 51
D
 GLU 4CYS 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 6OKD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 19Right-handed alpha
Helix 2
AA2
A
22 29Right-handed alpha
Helix 3
AA3
A
30 35Right-handed 310
Helix 4
AA4
A
41 58Right-handed alpha
Helix 5
AA5
A
121 128Right-handed alpha
Helix 6
AA6
A
145 156Right-handed alpha
Helix 7
AA7
A
220 229Right-handed alpha
Helix 8
AA8
A
236 240Right-handed 310
Helix 9
AA9
A
301 323Right-handed alpha
Helix 10
AB1
A
337 341Right-handed 310
Helix 11
AB2
A
342 351Right-handed alpha
Helix 12
AB3
A
355 358Right-handed 310
Helix 13
AB4
A
384 393Right-handed alpha
Helix 14
AB5
A
409 414Right-handed 310
Helix 15
AB6
A
422 429Right-handed alpha
Helix 16
AB7
A
454 462Right-handed alpha
Helix 17
AB8
A
464 485Right-handed alpha
Helix 18
AB9
A
494 509Right-handed alpha
Helix 19
AC1
A
510 517Right-handed alpha
Helix 20
AC2
A
521 545Right-handed alpha
Helix 21
AC3
A
549 561Right-handed alpha
Helix 22
AC4
A
562 563Right-handed 310
Helix 23
AC5
A
564 568Right-handed 310
Helix 24
AC6
A
590 601Right-handed alpha
Helix 25
AC7
A
609 631Right-handed alpha
Helix 26
AC8
B
5 19Right-handed alpha
Helix 27
AC9
B
22 29Right-handed alpha
Helix 28
AD1
B
30 35Right-handed 310
Helix 29
AD2
B
41 58Right-handed alpha
Helix 30
AD3
B
121 128Right-handed alpha
Helix 31
AD4
B
145 156Right-handed alpha
Helix 32
AD5
B
220 229Right-handed alpha
Helix 33
AD6
B
236 240Right-handed 310
Helix 34
AD7
B
301 323Right-handed alpha
Helix 35
AD8
B
337 341Right-handed 310
Helix 36
AD9
B
342 351Right-handed alpha
Helix 37
AE1
B
355 358Right-handed 310
Helix 38
AE2
B
384 393Right-handed alpha
Helix 39
AE3
B
409 414Right-handed 310
Helix 40
AE4
B
422 429Right-handed alpha
Helix 41
AE5
B
454 462Right-handed alpha
Helix 42
AE6
B
464 485Right-handed alpha
Helix 43
AE7
B
494 509Right-handed alpha
Helix 44
AE8
B
510 517Right-handed alpha
Helix 45
AE9
B
521 545Right-handed alpha
Helix 46
AF1
B
549 561Right-handed alpha
Helix 47
AF2
B
562 568Right-handed 310
Helix 48
AF3
B
590 599Right-handed alpha
Helix 49
AF4
B
609 631Right-handed alpha
Helix 50
AF5
C
5 10Right-handed alpha
Helix 51
AF6
C
10 25Right-handed alpha
Helix 52
AF7
C
35 47Right-handed alpha
Helix 53
AF8
D
5 10Right-handed alpha
Helix 54
AF9
D
10 25Right-handed alpha
Helix 55
AG1
D
34 47Right-handed alpha
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There are 10 sheets in PDB entry 6OKD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 74first strand
Strand 2
A
262 275anti-parallel
Strand 3
A
328 335anti-parallel
Strand 4
A
280 290parallel
Strand 5
A
360 365parallel
Strand 6
A
434 440parallel
Strand 7
A
375 380anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 96first strand
Strand 2
A
81 86anti-parallel
Strand 3
A
254 259anti-parallel
Strand 4
A
108 112anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
181 182parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 116first strand
Strand 2
A
136 140parallel
Strand 3
A
160 164parallel
Strand 4
A
216 218parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 234first strand
Strand 2
A
246 249anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 74first strand
Strand 2
B
262 275anti-parallel
Strand 3
B
328 335anti-parallel
Strand 4
B
280 290parallel
Strand 5
B
360 365parallel
Strand 6
B
434 440parallel
Strand 7
B
375 380anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 96first strand
Strand 2
B
81 86anti-parallel
Strand 3
B
254 259anti-parallel
Strand 4
B
108 112anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 103first strand
Strand 2
B
181 182parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 116first strand
Strand 2
B
136 140parallel
Strand 3
B
160 164parallel
Strand 4
B
216 218parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 234first strand
Strand 2
B
246 249anti-parallel
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