Analysis of interatomic Contacts of Structural Units in PDB entry:
6OKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OKJ entry

There are 2 chains in PDB entry 6OKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1GLN 215
B
 VAL 1GLN 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6OKJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 11Right-handed 310
Helix 2
AA2
A
24 43Right-handed alpha
Helix 3
AA3
A
49 57Right-handed alpha
Helix 4
AA4
A
60 64Right-handed 310
Helix 5
AA5
A
66 77Right-handed alpha
Helix 6
AA6
A
116 127Right-handed alpha
Helix 7
AA7
A
136 142Right-handed 310
Helix 8
AA8
A
201 205Right-handed 310
Helix 9
AA9
B
8 11Right-handed 310
Helix 10
AB1
B
24 43Right-handed alpha
Helix 11
AB2
B
49 57Right-handed alpha
Helix 12
AB3
B
60 64Right-handed 310
Helix 13
AB4
B
66 77Right-handed alpha
Helix 14
AB5
B
116 127Right-handed alpha
Helix 15
AB6
B
137 142Right-handed 310
Helix 16
AB7
B
201 205Right-handed 310
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There are 6 sheets in PDB entry 6OKJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
157 166anti-parallel
Strand 3
A
129 133anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
157 166anti-parallel
Strand 3
A
172 177anti-parallel
Strand 4
A
189 193anti-parallel
Strand 5
A
146 147parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 111first strand
Strand 2
A
210 213anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
157 166anti-parallel
Strand 3
B
129 133anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
157 166anti-parallel
Strand 3
B
172 177anti-parallel
Strand 4
B
189 193anti-parallel
Strand 5
B
146 147parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 111first strand
Strand 2
B
210 213anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il