Analysis of interatomic Contacts of Structural Units in PDB entry:
6OKK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OKK entry

There are 33 chains in PDB entry 6OKK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	A 1	U 2090
B	PHE 24	THR 233
C	LYS 10	ARG 204
D	PRO 4	LEU 216
E	PRO 2	ALA 186
F	GLY 2	ALA 258
G	LYS 39	TYR 262
H	MET 1	ASN 213
I	ASP 7	ARG 195
J	ALA 3	PRO 190
K	VAL 2	PHE 130
L	ARG 5	ASN 218
M	LYS 6	TYR 143
N	ILE 21	SER 118
O	TYR 11	GLU 89
P	GLU 25	LEU 151
Q	GLY 2	SER 145
R	VAL 22	GLN 135
S	GLN 12	LYS 139
T	VAL 7	ARG 54
U	ARG 3	ALA 151
V	ASP 6	PHE 161
W	ARG 3	GLY 110
X	ASP 21	TYR 123
Y	ARG 15	ASN 168
Z	ILE 11	ASN 82
a	ASP 3	THR 122
b	LYS 35	THR 102
c	PRO 2	LYS 96
d	ASN 7	GLU 82
e	GLU 2	LEU 66
f	GLY 6	GLY 48
g	G 1	A 74

There are140 helices in PDB entry 6OKK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	57	62	Right-handed alpha
Helix 2	AA2	B	70	75	Right-handed alpha
Helix 3	AA3	B	76	80	Right-handed 310
Helix 4	AA4	B	106	114	Right-handed alpha
Helix 5	AA5	B	146	150	Right-handed 310
Helix 6	AA6	B	157	179	Right-handed alpha
Helix 7	AA7	B	180	189	Right-handed alpha
Helix 8	AA8	B	191	202	Right-handed alpha
Helix 9	AA9	B	224	233	Right-handed alpha
Helix 10	AB1	C	11	20	Right-handed alpha
Helix 11	AB2	C	30	35	Right-handed 310
Helix 12	AB3	C	50	67	Right-handed alpha
Helix 13	AB4	C	69	71	Right-handed 310
Helix 14	AB5	C	82	93	Right-handed alpha
Helix 15	AB6	C	129	139	Right-handed alpha
Helix 16	AB7	C	166	185	Right-handed alpha
Helix 17	AB8	D	6	29	Right-handed alpha
Helix 18	AB9	D	66	78	Right-handed alpha
Helix 19	AC1	D	98	113	Right-handed alpha
Helix 20	AC2	D	116	130	Right-handed alpha
Helix 21	AC3	D	162	168	Right-handed alpha
Helix 22	AC4	E	20	35	Right-handed alpha
Helix 23	AC5	E	39	62	Right-handed alpha
Helix 24	AC6	E	66	84	Right-handed alpha
Helix 25	AC7	E	100	107	Right-handed alpha
Helix 26	AC8	E	108	116	Right-handed alpha
Helix 27	AC9	E	121	131	Right-handed alpha
Helix 28	AD1	E	149	153	Right-handed 310
Helix 29	AD2	E	162	166	Right-handed 310
Helix 30	AD3	E	172	186	Right-handed alpha
Helix 31	AD4	F	15	19	Right-handed 310
Helix 32	AD5	F	37	41	Right-handed 310
Helix 33	AD6	F	43	50	Right-handed alpha
Helix 34	AD7	F	57	67	Right-handed alpha
Helix 35	AD8	F	115	120	Right-handed alpha
Helix 36	AD9	F	247	257	Right-handed alpha
Helix 37	AE1	G	45	53	Right-handed alpha
Helix 38	AE2	G	58	65	Right-handed alpha
Helix 39	AE3	G	71	79	Right-handed alpha
Helix 40	AE4	G	132	148	Right-handed alpha
Helix 41	AE5	G	193	204	Right-handed alpha
Helix 42	AE6	G	218	233	Right-handed alpha
Helix 43	AE7	G	238	243	Right-handed 310
Helix 44	AE8	G	250	255	Right-handed alpha
Helix 45	AE9	G	255	260	Right-handed alpha
Helix 46	AF1	H	20	25	Right-handed alpha
Helix 47	AF2	H	39	41	Right-handed 310
Helix 48	AF3	H	137	146	Right-handed alpha
Helix 49	AF4	H	180	213	Right-handed alpha
Helix 50	AF5	I	24	30	Right-handed alpha
Helix 51	AF6	I	52	56	Right-handed 310
Helix 52	AF7	I	58	68	Right-handed alpha
Helix 53	AF8	I	70	74	Right-handed 310
Helix 54	AF9	I	76	94	Right-handed alpha
Helix 55	AG1	I	98	111	Right-handed alpha
Helix 56	AG2	I	133	154	Right-handed alpha
Helix 57	AG3	I	159	174	Right-handed alpha
Helix 58	AG4	I	178	195	Right-handed alpha
Helix 59	AG5	J	16	31	Right-handed alpha
Helix 60	AG6	J	66	72	Right-handed alpha
Helix 61	AG7	J	76	88	Right-handed alpha
Helix 62	AG8	J	118	131	Right-handed alpha
Helix 63	AG9	J	164	181	Right-handed alpha
Helix 64	AH1	K	5	21	Right-handed alpha
Helix 65	AH2	K	31	44	Right-handed alpha
Helix 66	AH3	K	85	94	Right-handed alpha
Helix 67	AH4	K	113	120	Right-handed alpha
Helix 68	AH5	L	87	94	Right-handed alpha
Helix 69	AH6	L	106	117	Right-handed alpha
Helix 70	AH7	L	169	178	Right-handed alpha
Helix 71	AH8	L	188	193	Right-handed alpha
Helix 72	AH9	L	202	213	Right-handed alpha
Helix 73	AI1	M	45	57	Right-handed alpha
Helix 74	AI2	M	75	98	Right-handed alpha
Helix 75	AI3	M	99	114	Right-handed alpha
Helix 76	AI4	N	27	44	Right-handed alpha
Helix 77	AI5	N	93	102	Right-handed alpha
Helix 78	AI6	O	15	30	Right-handed alpha
Helix 79	AI7	O	49	64	Right-handed alpha
Helix 80	AI8	O	80	89	Right-handed alpha
Helix 81	AI9	P	70	89	Right-handed alpha
Helix 82	AJ1	P	110	123	Right-handed alpha
Helix 83	AJ2	Q	11	24	Right-handed alpha
Helix 84	AJ3	Q	26	34	Right-handed alpha
Helix 85	AJ4	Q	35	40	Right-handed alpha
Helix 86	AJ5	Q	131	138	Right-handed alpha
Helix 87	AJ6	R	23	36	Right-handed alpha
Helix 88	AJ7	R	42	50	Right-handed alpha
Helix 89	AJ8	R	66	78	Right-handed alpha
Helix 90	AJ9	R	90	97	Right-handed alpha
Helix 91	AK1	R	128	135	Right-handed alpha
Helix 92	AK2	S	27	34	Right-handed alpha
Helix 93	AK3	S	40	51	Right-handed alpha
Helix 94	AK4	S	62	74	Right-handed alpha
Helix 95	AK5	S	101	120	Right-handed alpha
Helix 96	AK6	S	121	130	Right-handed alpha
Helix 97	AK7	T	30	34	Right-handed 310
Helix 98	AK8	T	38	49	Right-handed alpha
Helix 99	AK9	U	29	43	Right-handed alpha
Helix 100	AL1	U	46	57	Right-handed alpha
Helix 101	AL2	U	62	67	Right-handed alpha
Helix 102	AL3	U	70	79	Right-handed alpha
Helix 103	AL4	U	85	105	Right-handed alpha
Helix 104	AL5	U	108	132	Right-handed alpha
Helix 105	AL6	U	145	150	Right-handed alpha
Helix 106	AL7	V	48	53	Right-handed alpha
Helix 107	AL8	V	153	157	Right-handed 310
Helix 108	AL9	W	6	19	Right-handed alpha
Helix 109	AM1	W	27	39	Right-handed alpha
Helix 110	AM2	W	44	61	Right-handed alpha
Helix 111	AM3	W	71	83	Right-handed alpha
Helix 112	AM4	W	99	110	Right-handed alpha
Helix 113	AM5	X	22	28	Right-handed alpha
Helix 114	AM6	X	29	37	Right-handed alpha
Helix 115	AM7	X	38	48	Right-handed alpha
Helix 116	AM8	X	49	67	Right-handed alpha
Helix 117	AM9	X	86	90	Right-handed 310
Helix 118	AN1	Y	28	32	Right-handed 310
Helix 119	AN2	Y	33	49	Right-handed alpha
Helix 120	AN3	Y	55	60	Right-handed 310
Helix 121	AN4	Y	63	67	Right-handed 310
Helix 122	AN5	Y	74	90	Right-handed alpha
Helix 123	AN6	Y	94	102	Right-handed alpha
Helix 124	AN7	Y	119	134	Right-handed alpha
Helix 125	AN8	Y	148	168	Right-handed alpha
Helix 126	AN9	Z	25	29	Right-handed 310
Helix 127	AO1	Z	55	62	Right-handed alpha
Helix 128	AO2	Z	63	75	Right-handed alpha
Helix 129	AO3	a	36	48	Right-handed alpha
Helix 130	AO4	a	52	54	Right-handed 310
Helix 131	AO5	a	79	86	Right-handed alpha
Helix 132	AO6	a	88	96	Right-handed alpha
Helix 133	AO7	a	107	114	Right-handed alpha
Helix 134	AO8	b	60	69	Right-handed alpha
Helix 135	AO9	b	71	84	Right-handed alpha
Helix 136	AP1	c	47	57	Right-handed alpha
Helix 137	AP2	c	74	81	Right-handed alpha
Helix 138	AP3	c	88	94	Right-handed alpha
Helix 139	AP4	f	12	18	Right-handed alpha
Helix 140	AP5	f	32	44	Right-handed alpha

There are 42 sheets in PDB entry 6OKK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	48	first strand
Strand 2	B	28	33	anti-parallel
Strand 3	B	95	96	parallel
Strand 4	B	91	92	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	85	87	anti-parallel
Strand 3	B	99	102	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	128	first strand
Strand 2	B	134	136	anti-parallel
Strand 3	B	216	219	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	25	first strand
Strand 2	C	46	48	anti-parallel
Strand 3	C	37	40	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	76	first strand
Strand 2	C	120	123	parallel
Strand 3	C	144	145	parallel
Strand 4	C	158	159	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	154	first strand
Strand 2	D	134	141	anti-parallel
Strand 3	D	181	190	anti-parallel
Strand 4	D	169	178	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	139	140	first strand
Strand 2	E	135	136	anti-parallel
Strand 3	E	156	157	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	10	first strand
Strand 2	F	27	28	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	76	first strand
Strand 2	F	70	72	anti-parallel
Strand 3	F	89	92	anti-parallel
Strand 4	F	97	103	anti-parallel
Strand 5	F	109	111	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	146	148	first strand
Strand 2	F	136	141	anti-parallel
Strand 3	F	121	132	anti-parallel
Strand 4	F	159	163	anti-parallel
Strand 5	F	169	173	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	192	193	first strand
Strand 2	F	181	183	anti-parallel
Strand 3	F	225	227	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	197	198	first strand
Strand 2	F	207	211	anti-parallel
Strand 3	F	217	221	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	89	99	first strand
Strand 2	G	108	117	anti-parallel
Strand 3	G	122	130	anti-parallel
Strand 4	G	149	150	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	170	174	first strand
Strand 2	G	177	183	anti-parallel
Strand 3	G	208	209	anti-parallel
Strand 4	G	190	191	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	17	first strand
Strand 2	H	2	7	anti-parallel
Strand 3	H	111	115	parallel
Strand 4	H	49	52	anti-parallel
Strand 5	H	35	37	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	63	64	first strand
Strand 2	H	94	99	parallel
Strand 3	H	72	76	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	114	116	first strand
Strand 2	I	129	131	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	46	51	first strand
Strand 2	J	58	65	anti-parallel
Strand 3	J	91	97	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	136	138	first strand
Strand 2	J	154	155	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	184	185	first strand
Strand 2	J	149	152	parallel
Strand 3	J	140	143	anti-parallel
Strand 4	K	47	53	anti-parallel
Strand 5	K	61	65	anti-parallel
Strand 6	K	24	27	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	72	74	first strand
Strand 2	K	124	129	anti-parallel
Strand 3	K	101	106	anti-parallel
Strand 4	K	109	112	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	37	38	first strand
Strand 2	L	52	60	parallel
Strand 3	L	42	48	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	72	75	first strand
Strand 2	L	64	67	anti-parallel
Strand 3	L	197	199	parallel
Strand 4	L	180	185	anti-parallel
Strand 5	L	101	105	anti-parallel
Strand 6	L	78	83	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	7	11	first strand
Strand 2	M	18	25	anti-parallel
Strand 3	M	64	71	anti-parallel
Strand 4	M	31	32	parallel
Strand 5	M	35	36	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	53	54	first strand
Strand 2	N	84	87	anti-parallel
Strand 3	N	22	25	anti-parallel
Strand 4	N	109	112	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	59	65	first strand
Strand 2	N	76	82	anti-parallel
Strand 3	T	51	52	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	31	32	first strand
Strand 2	O	77	79	anti-parallel
Strand 3	O	66	68	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	52	55	first strand
Strand 2	P	43	45	anti-parallel
Strand 3	P	28	34	anti-parallel
Strand 4	P	92	98	parallel
Strand 5	P	125	126	parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	48	60	first strand
Strand 2	Q	68	76	anti-parallel
Strand 3	Q	82	86	anti-parallel
Strand 4	Q	122	127	parallel
Strand 5	Q	101	106	anti-parallel
Strand 6	Q	48	60	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	38	40	first strand
Strand 2	R	117	119	anti-parallel
Strand 3	R	56	58	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	28	29	first strand
Strand 2	T	36	37	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	73	80	first strand
Strand 2	V	86	94	anti-parallel
Strand 3	V	105	113	anti-parallel
Strand 4	V	140	145	parallel
Strand 5	V	125	129	anti-parallel
Strand 6	V	73	80	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	93	94	first strand
Strand 2	X	105	106	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	104	108	first strand
Strand 2	Y	111	116	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	136	137	first strand
Strand 2	Y	146	147	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	32	39	first strand
Strand 2	Z	45	54	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	6	15	first strand
Strand 2	a	20	28	anti-parallel
Strand 3	a	71	77	anti-parallel
Strand 4	a	56	62	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	20	22	first strand
Strand 2	c	29	31	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	36	38	first strand
Strand 2	c	71	73	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	41	43	first strand
Strand 2	c	66	68	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	44	45	first strand
Strand 2	d	30	34	anti-parallel
Strand 3	d	76	79	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	40	44	first strand
Strand 2	e	23	28	anti-parallel
Strand 3	e	5	14	anti-parallel
Strand 4	e	53	56	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OKK

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OKK