Analysis of interatomic Contacts of Structural Units in PDB entry:
6OKR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OKR entry

There are 7 chains in PDB entry 6OKR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 215	THR 615
B	GLU 215	THR 615
C	GLU 215	THR 615
D	GLU 215	THR 615
E	GLU 215	THR 615
F	GLU 215	THR 615
G	GLU 215	THR 615

There are 57 helices in PDB entry 6OKR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	246	251	Right-handed 310
Helix 2	AA2	A	272	279	Right-handed alpha
Helix 3	AA3	A	286	291	Right-handed 310
Helix 4	AA4	A	462	473	Right-handed alpha
Helix 5	AA5	A	506	512	Right-handed alpha
Helix 6	AA6	A	546	555	Right-handed alpha
Helix 7	AA7	A	581	592	Right-handed alpha
Helix 8	AA8	A	599	603	Right-handed 310
Helix 9	AA9	B	246	251	Right-handed 310
Helix 10	AB1	B	272	279	Right-handed alpha
Helix 11	AB2	B	286	291	Right-handed 310
Helix 12	AB3	B	462	473	Right-handed alpha
Helix 13	AB4	B	502	505	Right-handed 310
Helix 14	AB5	B	506	512	Right-handed alpha
Helix 15	AB6	B	546	555	Right-handed alpha
Helix 16	AB7	B	581	592	Right-handed alpha
Helix 17	AB8	B	599	603	Right-handed 310
Helix 18	AB9	C	246	251	Right-handed 310
Helix 19	AC1	C	272	279	Right-handed alpha
Helix 20	AC2	C	286	291	Right-handed 310
Helix 21	AC3	C	462	473	Right-handed alpha
Helix 22	AC4	C	506	512	Right-handed alpha
Helix 23	AC5	C	546	555	Right-handed alpha
Helix 24	AC6	C	581	592	Right-handed alpha
Helix 25	AC7	C	599	603	Right-handed 310
Helix 26	AC8	D	247	251	Right-handed 310
Helix 27	AC9	D	272	279	Right-handed alpha
Helix 28	AD1	D	286	291	Right-handed 310
Helix 29	AD2	D	462	473	Right-handed alpha
Helix 30	AD3	D	506	512	Right-handed alpha
Helix 31	AD4	D	546	555	Right-handed alpha
Helix 32	AD5	D	581	592	Right-handed alpha
Helix 33	AD6	D	599	603	Right-handed 310
Helix 34	AD7	E	247	251	Right-handed 310
Helix 35	AD8	E	272	279	Right-handed alpha
Helix 36	AD9	E	286	291	Right-handed 310
Helix 37	AE1	E	462	473	Right-handed alpha
Helix 38	AE2	E	506	512	Right-handed alpha
Helix 39	AE3	E	546	555	Right-handed alpha
Helix 40	AE4	E	581	592	Right-handed alpha
Helix 41	AE5	E	599	603	Right-handed 310
Helix 42	AE6	F	247	251	Right-handed 310
Helix 43	AE7	F	272	279	Right-handed alpha
Helix 44	AE8	F	286	291	Right-handed 310
Helix 45	AE9	F	462	473	Right-handed alpha
Helix 46	AF1	F	506	512	Right-handed alpha
Helix 47	AF2	F	546	555	Right-handed alpha
Helix 48	AF3	F	581	592	Right-handed alpha
Helix 49	AF4	F	599	603	Right-handed 310
Helix 50	AF5	G	246	251	Right-handed 310
Helix 51	AF6	G	272	279	Right-handed alpha
Helix 52	AF7	G	286	291	Right-handed 310
Helix 53	AF8	G	462	473	Right-handed alpha
Helix 54	AF9	G	506	512	Right-handed alpha
Helix 55	AG1	G	546	555	Right-handed alpha
Helix 56	AG2	G	581	592	Right-handed alpha
Helix 57	AG3	G	599	603	Right-handed 310

There are 42 sheets in PDB entry 6OKR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	238	first strand
Strand 2	A	241	243	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	310	first strand
Strand 2	A	388	397	anti-parallel
Strand 3	A	447	449	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	423	first strand
Strand 2	A	407	414	anti-parallel
Strand 3	A	476	484	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	489	490	first strand
Strand 2	A	496	497	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	530	first strand
Strand 2	A	515	520	anti-parallel
Strand 3	A	610	614	parallel
Strand 4	A	577	578	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	559	first strand
Strand 2	A	564	565	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	238	first strand
Strand 2	B	241	243	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	310	first strand
Strand 2	B	388	397	anti-parallel
Strand 3	B	447	449	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	421	423	first strand
Strand 2	B	407	414	anti-parallel
Strand 3	B	476	484	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	490	first strand
Strand 2	B	496	497	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	525	530	first strand
Strand 2	B	515	520	anti-parallel
Strand 3	B	610	614	parallel
Strand 4	B	577	579	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	558	559	first strand
Strand 2	B	564	565	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	238	first strand
Strand 2	C	241	243	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	310	first strand
Strand 2	C	388	397	anti-parallel
Strand 3	C	447	449	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	421	423	first strand
Strand 2	C	407	414	anti-parallel
Strand 3	C	476	484	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	489	490	first strand
Strand 2	C	496	497	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	525	530	first strand
Strand 2	C	515	520	anti-parallel
Strand 3	C	610	614	parallel
Strand 4	C	577	578	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	558	559	first strand
Strand 2	C	564	565	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	238	first strand
Strand 2	D	241	243	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	299	310	first strand
Strand 2	D	388	398	anti-parallel
Strand 3	D	447	449	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	421	423	first strand
Strand 2	D	407	414	anti-parallel
Strand 3	D	476	484	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	490	first strand
Strand 2	D	496	497	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	525	530	first strand
Strand 2	D	515	520	anti-parallel
Strand 3	D	610	614	parallel
Strand 4	D	577	578	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	558	559	first strand
Strand 2	D	564	565	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	236	238	first strand
Strand 2	E	241	243	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	300	310	first strand
Strand 2	E	388	397	anti-parallel
Strand 3	E	447	449	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	421	423	first strand
Strand 2	E	407	414	anti-parallel
Strand 3	E	476	484	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	489	490	first strand
Strand 2	E	496	497	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	525	530	first strand
Strand 2	E	515	520	anti-parallel
Strand 3	E	610	614	parallel
Strand 4	E	577	578	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	558	559	first strand
Strand 2	E	564	565	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	236	238	first strand
Strand 2	F	241	243	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	299	310	first strand
Strand 2	F	388	398	anti-parallel
Strand 3	F	447	449	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	421	423	first strand
Strand 2	F	407	414	anti-parallel
Strand 3	F	476	484	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	489	490	first strand
Strand 2	F	496	497	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	525	530	first strand
Strand 2	F	515	520	anti-parallel
Strand 3	F	610	614	parallel
Strand 4	F	577	579	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	558	559	first strand
Strand 2	F	564	565	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	236	238	first strand
Strand 2	G	241	243	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	300	310	first strand
Strand 2	G	388	397	anti-parallel
Strand 3	G	447	449	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	421	423	first strand
Strand 2	G	407	414	anti-parallel
Strand 3	G	476	484	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	489	490	first strand
Strand 2	G	496	497	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	525	530	first strand
Strand 2	G	515	520	anti-parallel
Strand 3	G	610	614	parallel
Strand 4	G	577	578	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	558	559	first strand
Strand 2	G	564	565	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OKR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OKR