Analysis of interatomic Contacts of Structural Units in PDB entry:
6OLY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OLY entry

There are 4 chains in PDB entry 6OLY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 24	ALA 336
B	ILE 23	ALA 336
C	ARG 22	PRO 339
D	LEU 25	ALA 336

There are 64 helices in PDB entry 6OLY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	38	Right-handed alpha
Helix 2	AA2	A	45	58	Right-handed alpha
Helix 3	AA3	A	69	111	Right-handed alpha
Helix 4	AA4	A	112	116	Right-handed 310
Helix 5	AA5	A	124	134	Right-handed alpha
Helix 6	AA6	A	147	156	Right-handed alpha
Helix 7	AA7	A	166	171	Right-handed alpha
Helix 8	AA8	A	172	174	Right-handed 310
Helix 9	AA9	A	187	200	Right-handed alpha
Helix 10	AB1	A	213	215	Right-handed 310
Helix 11	AB2	A	216	223	Right-handed alpha
Helix 12	AB3	A	230	245	Right-handed alpha
Helix 13	AB4	A	246	257	Right-handed alpha
Helix 14	AB5	A	279	284	Right-handed alpha
Helix 15	AB6	A	284	290	Right-handed alpha
Helix 16	AB7	A	323	334	Right-handed alpha
Helix 17	AB8	B	24	38	Right-handed alpha
Helix 18	AB9	B	45	57	Right-handed alpha
Helix 19	AC1	B	69	108	Right-handed alpha
Helix 20	AC2	B	124	134	Right-handed alpha
Helix 21	AC3	B	145	147	Right-handed 310
Helix 22	AC4	B	148	156	Right-handed alpha
Helix 23	AC5	B	166	171	Right-handed alpha
Helix 24	AC6	B	172	174	Right-handed 310
Helix 25	AC7	B	187	199	Right-handed alpha
Helix 26	AC8	B	213	215	Right-handed 310
Helix 27	AC9	B	216	224	Right-handed alpha
Helix 28	AD1	B	230	243	Right-handed alpha
Helix 29	AD2	B	246	257	Right-handed alpha
Helix 30	AD3	B	279	284	Right-handed alpha
Helix 31	AD4	B	284	290	Right-handed alpha
Helix 32	AD5	B	323	334	Right-handed alpha
Helix 33	AD6	C	23	26	Right-handed 310
Helix 34	AD7	C	27	38	Right-handed alpha
Helix 35	AD8	C	45	58	Right-handed alpha
Helix 36	AD9	C	69	110	Right-handed alpha
Helix 37	AE1	C	124	134	Right-handed alpha
Helix 38	AE2	C	147	156	Right-handed alpha
Helix 39	AE3	C	166	171	Right-handed alpha
Helix 40	AE4	C	172	174	Right-handed 310
Helix 41	AE5	C	187	200	Right-handed alpha
Helix 42	AE6	C	213	215	Right-handed 310
Helix 43	AE7	C	216	223	Right-handed alpha
Helix 44	AE8	C	230	243	Right-handed alpha
Helix 45	AE9	C	246	257	Right-handed alpha
Helix 46	AF1	C	279	284	Right-handed alpha
Helix 47	AF2	C	284	290	Right-handed alpha
Helix 48	AF3	C	323	334	Right-handed alpha
Helix 49	AF4	D	26	38	Right-handed alpha
Helix 50	AF5	D	45	58	Right-handed alpha
Helix 51	AF6	D	69	110	Right-handed alpha
Helix 52	AF7	D	124	134	Right-handed alpha
Helix 53	AF8	D	145	147	Right-handed 310
Helix 54	AF9	D	148	155	Right-handed alpha
Helix 55	AG1	D	166	171	Right-handed alpha
Helix 56	AG2	D	172	174	Right-handed 310
Helix 57	AG3	D	187	200	Right-handed alpha
Helix 58	AG4	D	213	215	Right-handed 310
Helix 59	AG5	D	216	223	Right-handed alpha
Helix 60	AG6	D	230	243	Right-handed alpha
Helix 61	AG7	D	246	257	Right-handed alpha
Helix 62	AG8	D	279	284	Right-handed alpha
Helix 63	AG9	D	284	290	Right-handed alpha
Helix 64	AH1	D	323	334	Right-handed alpha

There are 8 sheets in PDB entry 6OLY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	161	first strand
Strand 2	A	139	143	parallel
Strand 3	A	118	121	parallel
Strand 4	A	180	183	parallel
Strand 5	A	206	210	parallel
Strand 6	A	227	229	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	268	first strand
Strand 2	A	317	322	anti-parallel
Strand 3	A	292	298	anti-parallel
Strand 4	A	301	304	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	161	first strand
Strand 2	B	139	143	parallel
Strand 3	B	118	121	parallel
Strand 4	B	180	183	parallel
Strand 5	B	206	210	parallel
Strand 6	B	227	229	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	268	first strand
Strand 2	B	317	322	anti-parallel
Strand 3	B	292	298	anti-parallel
Strand 4	B	301	304	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	161	first strand
Strand 2	C	139	143	parallel
Strand 3	C	118	121	parallel
Strand 4	C	180	183	parallel
Strand 5	C	206	210	parallel
Strand 6	C	227	229	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	263	268	first strand
Strand 2	C	317	322	anti-parallel
Strand 3	C	292	298	anti-parallel
Strand 4	C	301	304	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	161	first strand
Strand 2	D	139	143	parallel
Strand 3	D	118	121	parallel
Strand 4	D	180	183	parallel
Strand 5	D	206	210	parallel
Strand 6	D	227	229	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	268	first strand
Strand 2	D	317	322	anti-parallel
Strand 3	D	292	298	anti-parallel
Strand 4	D	301	304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OLY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OLY