Analysis of interatomic Contacts of Structural Units in PDB entry:
6OM4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OM4 entry

There are 4 chains in PDB entry 6OM4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 348
B
 MET 1GLY 347
C
 ARG 2ASP 7
D
 ARG 2ASP 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6OM4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 44Right-handed alpha
Helix 2
AA2
A
51 59Right-handed alpha
Helix 3
AA3
A
61 75Right-handed alpha
Helix 4
AA4
A
82 84Right-handed 310
Helix 5
AA5
A
92 102Right-handed alpha
Helix 6
AA6
A
105 115Right-handed alpha
Helix 7
AA7
A
124 137Right-handed alpha
Helix 8
AA8
A
151 157Right-handed 310
Helix 9
AA9
A
162 166Right-handed 310
Helix 10
AB1
A
169 182Right-handed alpha
Helix 11
AB2
A
196 203Right-handed 310
Helix 12
AB3
A
218 231Right-handed alpha
Helix 13
AB4
A
272 286Right-handed alpha
Helix 14
AB5
A
291 312Right-handed alpha
Helix 15
AB6
B
22 26Right-handed 310
Helix 16
AB7
B
31 44Right-handed alpha
Helix 17
AB8
B
50 58Right-handed alpha
Helix 18
AB9
B
61 75Right-handed alpha
Helix 19
AC1
B
82 85Right-handed 310
Helix 20
AC2
B
92 102Right-handed alpha
Helix 21
AC3
B
105 115Right-handed alpha
Helix 22
AC4
B
124 137Right-handed alpha
Helix 23
AC5
B
151 157Right-handed 310
Helix 24
AC6
B
162 166Right-handed 310
Helix 25
AC7
B
169 182Right-handed alpha
Helix 26
AC8
B
196 203Right-handed 310
Helix 27
AC9
B
218 231Right-handed alpha
Helix 28
AD1
B
272 285Right-handed alpha
Helix 29
AD2
B
291 312Right-handed alpha
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There are 6 sheets in PDB entry 6OM4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
2 5anti-parallel
Strand 3
A
78 80anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 14first strand
Strand 2
A
17 20anti-parallel
Strand 3
A
27 29anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 191first strand
Strand 2
A
141 146parallel
Strand 3
A
117 121parallel
Strand 4
A
208 211parallel
Strand 5
A
234 240parallel
Strand 6
A
243 250anti-parallel
Strand 7
A
321 326anti-parallel
Strand 8
A
332 336anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
78 80anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 14first strand
Strand 2
B
17 20anti-parallel
Strand 3
B
27 29anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 191first strand
Strand 2
B
141 146parallel
Strand 3
B
117 121parallel
Strand 4
B
208 211parallel
Strand 5
B
234 240parallel
Strand 6
B
243 250anti-parallel
Strand 7
B
321 326anti-parallel
Strand 8
B
332 336anti-parallel
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