Analysis of interatomic Contacts of Structural Units in PDB entry:
6OM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OM5 entry

There is 1 chain in PDB entry 6OM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 21ASN 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6OM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 68Right-handed alpha
Helix 2
AA2
A
76 86Right-handed alpha
Helix 3
AA3
A
87 90Right-handed 310
Helix 4
AA4
A
107 109Right-handed 310
Helix 5
AA5
A
147 152Right-handed alpha
Helix 6
AA6
A
260 264Right-handed 310
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There are 3 sheets in PDB entry 6OM5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
A
154 159anti-parallel
Strand 3
A
135 141anti-parallel
Strand 4
A
124 129anti-parallel
Strand 5
A
102 105anti-parallel
Strand 6
A
94 96anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
50 55anti-parallel
Strand 3
A
74 75anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 178first strand
Strand 2
A
189 196anti-parallel
Strand 3
A
201 208anti-parallel
Strand 4
A
211 220anti-parallel
Strand 5
A
225 232anti-parallel
Strand 6
A
235 244anti-parallel
Strand 7
A
250 256anti-parallel
Strand 8
A
265 271anti-parallel
Strand 9
A
170 178anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il