Analysis of interatomic Contacts of Structural Units in PDB entry:
6OMA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OMA entry

There are 13 chains in PDB entry 6OMA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 160	SER 458
B	ALA 160	SER 458
C	ALA 160	SER 458
D	ALA 160	SER 458
E	ALA 160	SER 458
F	ALA 160	SER 458
G	ALA 160	SER 458
H	ALA 160	SER 458
I	ALA 160	SER 458
J	ALA 160	SER 458
K	ALA 160	SER 458
L	ALA 160	SER 458
M	SER 164	SER 458

There are 77 helices in PDB entry 6OMA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	256	260	Right-handed 310
Helix 2	AA2	A	266	289	Right-handed alpha
Helix 3	AA3	A	298	305	Right-handed 310
Helix 4	AA4	A	324	335	Right-handed alpha
Helix 5	AA5	A	350	356	Right-handed alpha
Helix 6	AA6	B	191	195	Right-handed 310
Helix 7	AA7	B	266	289	Right-handed alpha
Helix 8	AA8	B	298	303	Right-handed alpha
Helix 9	AA9	B	325	331	Right-handed alpha
Helix 10	AB1	B	351	355	Right-handed 310
Helix 11	AB2	B	381	385	Right-handed 310
Helix 12	AB3	C	257	262	Right-handed alpha
Helix 13	AB4	C	266	289	Right-handed alpha
Helix 14	AB5	C	298	303	Right-handed alpha
Helix 15	AB6	C	324	332	Right-handed alpha
Helix 16	AB7	C	350	354	Right-handed 310
Helix 17	AB8	C	366	370	Right-handed 310
Helix 18	AB9	C	381	385	Right-handed 310
Helix 19	AC1	D	191	195	Right-handed 310
Helix 20	AC2	D	256	260	Right-handed 310
Helix 21	AC3	D	266	289	Right-handed alpha
Helix 22	AC4	D	298	303	Right-handed alpha
Helix 23	AC5	D	323	334	Right-handed alpha
Helix 24	AC6	D	349	354	Right-handed alpha
Helix 25	AC7	D	366	370	Right-handed 310
Helix 26	AC8	E	191	195	Right-handed 310
Helix 27	AC9	E	266	289	Right-handed alpha
Helix 28	AD1	E	325	335	Right-handed alpha
Helix 29	AD2	E	350	356	Right-handed alpha
Helix 30	AD3	E	381	385	Right-handed 310
Helix 31	AD4	F	257	262	Right-handed alpha
Helix 32	AD5	F	266	287	Right-handed alpha
Helix 33	AD6	F	298	302	Right-handed 310
Helix 34	AD7	F	324	335	Right-handed alpha
Helix 35	AD8	F	350	356	Right-handed alpha
Helix 36	AD9	F	381	385	Right-handed 310
Helix 37	AE1	G	256	260	Right-handed 310
Helix 38	AE2	G	266	289	Right-handed alpha
Helix 39	AE3	G	323	333	Right-handed alpha
Helix 40	AE4	G	350	355	Right-handed alpha
Helix 41	AE5	H	190	195	Right-handed 310
Helix 42	AE6	H	266	289	Right-handed alpha
Helix 43	AE7	H	298	306	Right-handed alpha
Helix 44	AE8	H	323	335	Right-handed alpha
Helix 45	AE9	H	349	354	Right-handed alpha
Helix 46	AF1	H	381	385	Right-handed 310
Helix 47	AF2	I	258	260	Right-handed 310
Helix 48	AF3	I	266	289	Right-handed alpha
Helix 49	AF4	I	298	303	Right-handed alpha
Helix 50	AF5	I	323	335	Right-handed alpha
Helix 51	AF6	I	350	354	Right-handed 310
Helix 52	AF7	I	366	370	Right-handed 310
Helix 53	AF8	I	381	385	Right-handed 310
Helix 54	AF9	J	256	260	Right-handed 310
Helix 55	AG1	J	268	289	Right-handed alpha
Helix 56	AG2	J	298	303	Right-handed alpha
Helix 57	AG3	J	323	335	Right-handed alpha
Helix 58	AG4	J	350	356	Right-handed alpha
Helix 59	AG5	J	381	385	Right-handed 310
Helix 60	AG6	K	266	289	Right-handed alpha
Helix 61	AG7	K	298	306	Right-handed alpha
Helix 62	AG8	K	324	334	Right-handed alpha
Helix 63	AG9	K	350	356	Right-handed alpha
Helix 64	AH1	K	366	370	Right-handed 310
Helix 65	AH2	L	258	260	Right-handed 310
Helix 66	AH3	L	266	289	Right-handed alpha
Helix 67	AH4	L	298	302	Right-handed 310
Helix 68	AH5	L	324	335	Right-handed alpha
Helix 69	AH6	L	350	355	Right-handed alpha
Helix 70	AH7	L	356	358	Right-handed 310
Helix 71	AH8	L	381	385	Right-handed 310
Helix 72	AH9	M	191	195	Right-handed 310
Helix 73	AI1	M	256	263	Right-handed alpha
Helix 74	AI2	M	266	289	Right-handed alpha
Helix 75	AI3	M	298	303	Right-handed alpha
Helix 76	AI4	M	324	334	Right-handed alpha
Helix 77	AI5	M	349	356	Right-handed alpha

There are 46 sheets in PDB entry 6OMA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	179	first strand
Strand 2	B	205	210	parallel
Strand 3	B	240	245	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	200	first strand
Strand 2	A	413	415	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	245	first strand
Strand 2	A	205	210	anti-parallel
Strand 3	F	177	179	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	424	first strand
Strand 2	A	432	438	anti-parallel
Strand 3	A	249	255	anti-parallel
Strand 4	B	218	219	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	390	first strand
Strand 2	A	345	349	parallel
Strand 3	A	402	405	anti-parallel
Strand 4	A	450	453	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	183	first strand
Strand 2	C	206	210	parallel
Strand 3	C	240	244	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	200	first strand
Strand 2	B	413	415	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	255	first strand
Strand 2	B	432	438	anti-parallel
Strand 3	B	420	424	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	390	first strand
Strand 2	B	345	349	parallel
Strand 3	B	402	405	anti-parallel
Strand 4	B	450	451	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	183	first strand
Strand 2	D	209	210	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	200	first strand
Strand 2	C	413	415	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	254	first strand
Strand 2	C	433	438	anti-parallel
Strand 3	C	420	424	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	388	389	first strand
Strand 2	C	345	348	parallel
Strand 3	C	402	405	anti-parallel
Strand 4	C	450	452	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	205	206	first strand
Strand 2	D	244	245	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	420	423	first strand
Strand 2	D	433	440	anti-parallel
Strand 3	D	247	254	anti-parallel
Strand 4	E	218	219	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	387	389	first strand
Strand 2	D	344	348	parallel
Strand 3	D	402	406	anti-parallel
Strand 4	D	451	453	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	198	200	first strand
Strand 2	E	413	417	parallel
Strand 3	E	439	440	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	206	210	first strand
Strand 2	E	240	244	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	250	256	first strand
Strand 2	E	431	437	anti-parallel
Strand 3	E	421	423	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	387	390	first strand
Strand 2	E	344	349	parallel
Strand 3	E	402	406	anti-parallel
Strand 4	E	450	452	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	247	256	first strand
Strand 2	F	431	440	anti-parallel
Strand 3	F	420	424	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	387	390	first strand
Strand 2	F	345	349	parallel
Strand 3	F	402	405	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	206	210	first strand
Strand 2	G	240	244	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	249	254	first strand
Strand 2	G	433	440	anti-parallel
Strand 3	G	415	423	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	387	390	first strand
Strand 2	G	344	349	parallel
Strand 3	G	402	406	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	177	183	first strand
Strand 2	I	206	210	parallel
Strand 3	I	241	243	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	198	200	first strand
Strand 2	H	413	424	parallel
Strand 3	H	431	440	anti-parallel
Strand 4	H	247	256	anti-parallel
Strand 5	I	218	219	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	205	210	first strand
Strand 2	H	240	245	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	387	389	first strand
Strand 2	H	345	348	parallel
Strand 3	H	402	405	anti-parallel
Strand 4	H	450	453	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	179	183	first strand
Strand 2	J	205	210	parallel
Strand 3	J	240	245	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	198	200	first strand
Strand 2	I	413	415	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	247	256	first strand
Strand 2	I	431	440	anti-parallel
Strand 3	I	420	424	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	387	389	first strand
Strand 2	I	344	348	parallel
Strand 3	I	402	406	anti-parallel
Strand 4	I	450	453	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	178	179	first strand
Strand 2	K	206	210	parallel
Strand 3	K	240	244	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	197	200	first strand
Strand 2	J	412	415	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	247	255	first strand
Strand 2	J	432	440	anti-parallel
Strand 3	J	420	424	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	387	390	first strand
Strand 2	J	344	349	parallel
Strand 3	J	402	406	anti-parallel
Strand 4	J	450	453	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	178	179	first strand
Strand 2	L	207	210	parallel
Strand 3	L	240	243	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	197	200	first strand
Strand 2	K	412	415	parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	249	253	first strand
Strand 2	K	433	438	anti-parallel
Strand 3	K	423	424	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	387	390	first strand
Strand 2	K	344	349	parallel
Strand 3	K	402	406	anti-parallel
Strand 4	K	450	453	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	250	256	first strand
Strand 2	L	431	439	anti-parallel
Strand 3	L	417	424	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	387	389	first strand
Strand 2	L	345	348	parallel
Strand 3	L	402	405	anti-parallel
Strand 4	L	450	453	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	198	200	first strand
Strand 2	M	413	415	parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	250	255	first strand
Strand 2	M	432	437	anti-parallel
Strand 3	M	420	425	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	387	389	first strand
Strand 2	M	345	348	parallel
Strand 3	M	402	405	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OMA

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OMA