Analysis of interatomic Contacts of Structural Units in PDB entry:
6OMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OMB entry

There are 6 chains in PDB entry 6OMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 211MET 784
B
 VAL 211PHE 796
C
 VAL 211PHE 796
D
 VAL 211PHE 796
E
 VAL 211PHE 796
G
 UNK 1UNK 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are116 helices in PDB entry 6OMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
219 236Right-handed alpha
Helix 2
AA2
A
237 244Right-handed alpha
Helix 3
AA3
A
260 271Right-handed alpha
Helix 4
AA4
A
291 306Right-handed alpha
Helix 5
AA5
A
329 344Right-handed alpha
Helix 6
AA6
A
383 395Right-handed alpha
Helix 7
AA7
A
396 398Right-handed 310
Helix 8
AA8
A
405 413Right-handed alpha
Helix 9
AA9
A
419 436Right-handed alpha
Helix 10
AB1
A
458 468Right-handed alpha
Helix 11
AB2
A
492 509Right-handed alpha
Helix 12
AB3
A
509 517Right-handed alpha
Helix 13
AB4
A
533 544Right-handed alpha
Helix 14
AB5
A
554 558Right-handed 310
Helix 15
AB6
A
563 579Right-handed alpha
Helix 16
AB7
A
605 619Right-handed alpha
Helix 17
AB8
A
635 639Right-handed 310
Helix 18
AB9
A
659 671Right-handed alpha
Helix 19
AC1
A
682 689Right-handed alpha
Helix 20
AC2
A
693 725Right-handed alpha
Helix 21
AC3
A
754 762Right-handed alpha
Helix 22
AC4
A
763 765Right-handed 310
Helix 23
AC5
A
770 784Right-handed alpha
Helix 24
AC6
B
219 236Right-handed alpha
Helix 25
AC7
B
237 244Right-handed alpha
Helix 26
AC8
B
260 272Right-handed alpha
Helix 27
AC9
B
281 285Right-handed 310
Helix 28
AD1
B
291 306Right-handed alpha
Helix 29
AD2
B
316 319Right-handed 310
Helix 30
AD3
B
329 343Right-handed alpha
Helix 31
AD4
B
383 395Right-handed alpha
Helix 32
AD5
B
405 413Right-handed alpha
Helix 33
AD6
B
418 436Right-handed alpha
Helix 34
AD7
B
448 453Right-handed alpha
Helix 35
AD8
B
458 468Right-handed alpha
Helix 36
AD9
B
492 505Right-handed alpha
Helix 37
AE1
B
509 516Right-handed alpha
Helix 38
AE2
B
533 545Right-handed alpha
Helix 39
AE3
B
554 558Right-handed 310
Helix 40
AE4
B
563 579Right-handed alpha
Helix 41
AE5
B
606 619Right-handed alpha
Helix 42
AE6
B
659 671Right-handed alpha
Helix 43
AE7
B
682 689Right-handed alpha
Helix 44
AE8
B
693 722Right-handed alpha
Helix 45
AE9
B
754 762Right-handed alpha
Helix 46
AF1
B
770 787Right-handed alpha
Helix 47
AF2
C
219 236Right-handed alpha
Helix 48
AF3
C
237 244Right-handed alpha
Helix 49
AF4
C
260 272Right-handed alpha
Helix 50
AF5
C
280 284Right-handed 310
Helix 51
AF6
C
291 307Right-handed alpha
Helix 52
AF7
C
329 343Right-handed alpha
Helix 53
AF8
C
383 395Right-handed alpha
Helix 54
AF9
C
406 413Right-handed alpha
Helix 55
AG1
C
419 440Right-handed alpha
Helix 56
AG2
C
458 468Right-handed alpha
Helix 57
AG3
C
485 489Right-handed 310
Helix 58
AG4
C
492 509Right-handed alpha
Helix 59
AG5
C
509 517Right-handed alpha
Helix 60
AG6
C
533 545Right-handed alpha
Helix 61
AG7
C
563 579Right-handed alpha
Helix 62
AG8
C
588 593Right-handed alpha
Helix 63
AG9
C
606 619Right-handed alpha
Helix 64
AH1
C
635 639Right-handed 310
Helix 65
AH2
C
659 671Right-handed alpha
Helix 66
AH3
C
682 690Right-handed alpha
Helix 67
AH4
C
693 722Right-handed alpha
Helix 68
AH5
C
754 762Right-handed alpha
Helix 69
AH6
C
772 787Right-handed alpha
Helix 70
AH7
D
219 236Right-handed alpha
Helix 71
AH8
D
237 244Right-handed alpha
Helix 72
AH9
D
260 272Right-handed alpha
Helix 73
AI1
D
291 306Right-handed alpha
Helix 74
AI2
D
316 319Right-handed 310
Helix 75
AI3
D
328 343Right-handed alpha
Helix 76
AI4
D
383 395Right-handed alpha
Helix 77
AI5
D
406 413Right-handed alpha
Helix 78
AI6
D
418 436Right-handed alpha
Helix 79
AI7
D
448 453Right-handed alpha
Helix 80
AI8
D
458 468Right-handed alpha
Helix 81
AI9
D
485 489Right-handed 310
Helix 82
AJ1
D
492 505Right-handed alpha
Helix 83
AJ2
D
509 517Right-handed alpha
Helix 84
AJ3
D
533 545Right-handed alpha
Helix 85
AJ4
D
554 558Right-handed 310
Helix 86
AJ5
D
563 579Right-handed alpha
Helix 87
AJ6
D
588 593Right-handed alpha
Helix 88
AJ7
D
601 619Right-handed alpha
Helix 89
AJ8
D
635 639Right-handed 310
Helix 90
AJ9
D
659 671Right-handed alpha
Helix 91
AK1
D
682 688Right-handed alpha
Helix 92
AK2
D
693 722Right-handed alpha
Helix 93
AK3
D
754 763Right-handed alpha
Helix 94
AK4
D
772 787Right-handed alpha
Helix 95
AK5
E
219 236Right-handed alpha
Helix 96
AK6
E
237 244Right-handed alpha
Helix 97
AK7
E
260 272Right-handed alpha
Helix 98
AK8
E
280 285Right-handed alpha
Helix 99
AK9
E
291 306Right-handed alpha
Helix 100
AL1
E
328 343Right-handed alpha
Helix 101
AL2
E
383 395Right-handed alpha
Helix 102
AL3
E
405 413Right-handed alpha
Helix 103
AL4
E
418 436Right-handed alpha
Helix 104
AL5
E
458 468Right-handed alpha
Helix 105
AL6
E
492 509Right-handed alpha
Helix 106
AL7
E
509 517Right-handed alpha
Helix 107
AL8
E
533 543Right-handed alpha
Helix 108
AL9
E
563 578Right-handed alpha
Helix 109
AM1
E
588 593Right-handed alpha
Helix 110
AM2
E
601 619Right-handed alpha
Helix 111
AM3
E
635 639Right-handed 310
Helix 112
AM4
E
659 671Right-handed alpha
Helix 113
AM5
E
681 688Right-handed alpha
Helix 114
AM6
E
693 713Right-handed alpha
Helix 115
AM7
E
754 762Right-handed alpha
Helix 116
AM8
E
771 788Right-handed alpha
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There are 10 sheets in PDB entry 6OMB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 280first strand
Strand 2
A
310 314parallel
Strand 3
A
352 356parallel
Strand 4
A
251 254parallel
Strand 5
A
375 378parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 552first strand
Strand 2
A
583 587parallel
Strand 3
A
628 632parallel
Strand 4
A
523 527parallel
Strand 5
A
653 654parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 279first strand
Strand 2
B
310 314parallel
Strand 3
B
352 357parallel
Strand 4
B
251 254parallel
Strand 5
B
375 378parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
548 552first strand
Strand 2
B
582 587parallel
Strand 3
B
627 633parallel
Strand 4
B
524 527parallel
Strand 5
B
651 654parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
250 253first strand
Strand 2
C
352 356parallel
Strand 3
C
309 314parallel
Strand 4
C
275 279parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
548 552first strand
Strand 2
C
582 587parallel
Strand 3
C
627 633parallel
Strand 4
C
524 527parallel
Strand 5
C
651 654parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
250 253first strand
Strand 2
D
352 356parallel
Strand 3
D
309 314parallel
Strand 4
D
275 279parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
548 552first strand
Strand 2
D
582 587parallel
Strand 3
D
627 633parallel
Strand 4
D
524 527parallel
Strand 5
D
651 654parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
276 279first strand
Strand 2
E
310 314parallel
Strand 3
E
352 357parallel
Strand 4
E
250 254parallel
Strand 5
E
375 378parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
548 552first strand
Strand 2
E
582 587parallel
Strand 3
E
628 632parallel
Strand 4
E
524 527parallel
Strand 5
E
651 654parallel
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