Analysis of interatomic Contacts of Structural Units in PDB entry:
6OME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OME entry

There is 1 chain in PDB entry 6OME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1LYS 499
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6OME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 45Right-handed alpha
Helix 2
AA2
A
46 51Right-handed 310
Helix 3
AA3
A
79 83Right-handed 310
Helix 4
AA4
A
84 102Right-handed alpha
Helix 5
AA5
A
120 136Right-handed alpha
Helix 6
AA6
A
161 188Right-handed alpha
Helix 7
AA7
A
194 209Right-handed alpha
Helix 8
AA8
A
218 225Right-handed alpha
Helix 9
AA9
A
227 235Right-handed alpha
Helix 10
AB1
A
276 281Right-handed alpha
Helix 11
AB2
A
282 286Right-handed 310
Helix 12
AB3
A
287 304Right-handed alpha
Helix 13
AB4
A
347 363Right-handed alpha
Helix 14
AB5
A
375 383Right-handed alpha
Helix 15
AB6
A
393 408Right-handed alpha
Helix 16
AB7
A
417 425Right-handed 310
Helix 17
AB8
A
439 451Right-handed alpha
Helix 18
AB9
A
485 497Right-handed alpha
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There are 6 sheets in PDB entry 6OME. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
154 158parallel
Strand 3
A
106 110parallel
Strand 4
A
18 26parallel
Strand 5
A
29 32anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
154 158parallel
Strand 3
A
106 110parallel
Strand 4
A
18 26parallel
Strand 5
A
71 76parallel
Strand 6
A
58 62anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 217first strand
Strand 2
A
242 249anti-parallel
Strand 3
A
308 318anti-parallel
Strand 4
A
264 268parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 217first strand
Strand 2
A
242 249anti-parallel
Strand 3
A
308 318anti-parallel
Strand 4
A
257 262parallel
Strand 5
A
367 372parallel
Strand 6
A
458 463parallel
Strand 7
A
387 391anti-parallel
Strand 8
A
411 413parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 332first strand
Strand 2
A
338 340anti-parallel
Strand 3
A
431 432parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 470first strand
Strand 2
A
480 481anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il