Analysis of interatomic Contacts of Structural Units in PDB entry:
6OMI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OMI entry

There are 3 chains in PDB entry 6OMI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 41GLU 404
B
 ASN 40GLU 404
C
 ASN 40LEU 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6OMI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 64Right-handed alpha
Helix 2
AA2
A
70 78Right-handed alpha
Helix 3
AA3
A
89 99Right-handed alpha
Helix 4
AA4
A
118 126Right-handed alpha
Helix 5
AA5
A
172 178Right-handed alpha
Helix 6
AA6
A
185 211Right-handed alpha
Helix 7
AA7
A
228 232Right-handed 310
Helix 8
AA8
A
234 250Right-handed alpha
Helix 9
AA9
A
251 254Right-handed 310
Helix 10
AB1
A
321 327Right-handed 310
Helix 11
AB2
A
330 339Right-handed alpha
Helix 12
AB3
A
341 348Right-handed alpha
Helix 13
AB4
A
363 368Right-handed alpha
Helix 14
AB5
A
375 383Right-handed alpha
Helix 15
AB6
B
48 65Right-handed alpha
Helix 16
AB7
B
70 78Right-handed alpha
Helix 17
AB8
B
89 99Right-handed alpha
Helix 18
AB9
B
118 126Right-handed alpha
Helix 19
AC1
B
172 178Right-handed alpha
Helix 20
AC2
B
185 211Right-handed alpha
Helix 21
AC3
B
228 232Right-handed 310
Helix 22
AC4
B
234 250Right-handed alpha
Helix 23
AC5
B
321 327Right-handed 310
Helix 24
AC6
B
330 339Right-handed alpha
Helix 25
AC7
B
341 348Right-handed alpha
Helix 26
AC8
B
363 368Right-handed alpha
Helix 27
AC9
B
375 383Right-handed alpha
Helix 28
AD1
C
48 64Right-handed alpha
Helix 29
AD2
C
70 78Right-handed alpha
Helix 30
AD3
C
89 99Right-handed alpha
Helix 31
AD4
C
118 126Right-handed alpha
Helix 32
AD5
C
172 178Right-handed alpha
Helix 33
AD6
C
185 211Right-handed alpha
Helix 34
AD7
C
228 232Right-handed 310
Helix 35
AD8
C
234 250Right-handed alpha
Helix 36
AD9
C
321 327Right-handed 310
Helix 37
AE1
C
330 339Right-handed alpha
Helix 38
AE2
C
341 348Right-handed alpha
Helix 39
AE3
C
363 368Right-handed alpha
Helix 40
AE4
C
375 384Right-handed alpha
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There are 9 sheets in PDB entry 6OMI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 275first strand
Strand 2
A
278 282anti-parallel
Strand 3
A
257 263parallel
Strand 4
A
214 220parallel
Strand 5
A
306 314parallel
Strand 6
A
148 161parallel
Strand 7
A
129 138anti-parallel
Strand 8
A
44 47anti-parallel
Strand 9
A
391 394parallel
Strand 10
A
399 400anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
183 184anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 354first strand
Strand 2
A
359 361anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 275first strand
Strand 2
B
278 282anti-parallel
Strand 3
B
257 263parallel
Strand 4
B
214 220parallel
Strand 5
B
306 314parallel
Strand 6
B
148 161parallel
Strand 7
B
129 138anti-parallel
Strand 8
B
44 47anti-parallel
Strand 9
B
391 394parallel
Strand 10
B
399 400anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 180first strand
Strand 2
B
183 184anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
352 354first strand
Strand 2
B
359 361anti-parallel
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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
271 275first strand
Strand 2
C
278 282anti-parallel
Strand 3
C
257 263parallel
Strand 4
C
214 220parallel
Strand 5
C
306 314parallel
Strand 6
C
148 161parallel
Strand 7
C
129 138anti-parallel
Strand 8
C
44 47anti-parallel
Strand 9
C
391 394parallel
Strand 10
C
399 400anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
179 180first strand
Strand 2
C
183 184anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
352 354first strand
Strand 2
C
359 361anti-parallel
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