Analysis of interatomic Contacts of Structural Units in PDB entry:
6OMQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OMQ entry

There are 2 chains in PDB entry 6OMQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 356
B
 MET 1VAL 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6OMQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 24Right-handed alpha
Helix 2
AA2
A
64 69Right-handed alpha
Helix 3
AA3
A
69 81Right-handed alpha
Helix 4
AA4
A
90 98Right-handed 310
Helix 5
AA5
A
100 119Right-handed alpha
Helix 6
AA6
A
120 123Right-handed 310
Helix 7
AA7
A
136 150Right-handed alpha
Helix 8
AA8
A
169 171Right-handed 310
Helix 9
AA9
A
172 183Right-handed alpha
Helix 10
AB1
A
203 212Right-handed alpha
Helix 11
AB2
A
212 226Right-handed alpha
Helix 12
AB3
A
227 232Right-handed alpha
Helix 13
AB4
A
245 261Right-handed alpha
Helix 14
AB5
A
272 280Right-handed alpha
Helix 15
AB6
A
289 299Right-handed alpha
Helix 16
AB7
A
318 328Right-handed alpha
Helix 17
AB8
A
331 340Right-handed alpha
Helix 18
AB9
A
340 347Right-handed alpha
Helix 19
AC1
B
18 24Right-handed alpha
Helix 20
AC2
B
28 32Right-handed 310
Helix 21
AC3
B
56 62Right-handed alpha
Helix 22
AC4
B
64 69Right-handed alpha
Helix 23
AC5
B
69 81Right-handed alpha
Helix 24
AC6
B
90 98Right-handed 310
Helix 25
AC7
B
100 119Right-handed alpha
Helix 26
AC8
B
120 123Right-handed 310
Helix 27
AC9
B
136 150Right-handed alpha
Helix 28
AD1
B
169 171Right-handed 310
Helix 29
AD2
B
172 183Right-handed alpha
Helix 30
AD3
B
203 212Right-handed alpha
Helix 31
AD4
B
212 226Right-handed alpha
Helix 32
AD5
B
227 232Right-handed alpha
Helix 33
AD6
B
245 261Right-handed alpha
Helix 34
AD7
B
262 265Right-handed 310
Helix 35
AD8
B
272 280Right-handed alpha
Helix 36
AD9
B
289 298Right-handed alpha
Helix 37
AE1
B
318 328Right-handed alpha
Helix 38
AE2
B
331 340Right-handed alpha
Helix 39
AE3
B
340 347Right-handed alpha
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There are 5 sheets in PDB entry 6OMQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
82 87parallel
Strand 3
A
126 128parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
41 46anti-parallel
Strand 3
A
49 55anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
154 158parallel
Strand 3
A
185 189parallel
Strand 4
A
237 240parallel
Strand 5
A
281 285parallel
Strand 6
A
303 305parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
B
82 87parallel
Strand 3
B
126 131parallel
Strand 4
B
154 158parallel
Strand 5
B
185 189parallel
Strand 6
B
237 240parallel
Strand 7
B
281 285parallel
Strand 8
B
303 305parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 38first strand
Strand 2
B
41 46anti-parallel
Strand 3
B
49 55anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il