Analysis of interatomic Contacts of Structural Units in PDB entry:
6OMS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OMS entry

There are 2 chains in PDB entry 6OMS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 9	ILE 575
B	ASN 8	ILE 575

There are 49 helices in PDB entry 6OMS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	21	Right-handed alpha
Helix 2	AA2	A	21	35	Right-handed alpha
Helix 3	AA3	A	36	38	Right-handed 310
Helix 4	AA4	A	40	46	Right-handed alpha
Helix 5	AA5	A	52	60	Right-handed alpha
Helix 6	AA6	A	64	77	Right-handed alpha
Helix 7	AA7	A	80	84	Right-handed 310
Helix 8	AA8	A	109	131	Right-handed alpha
Helix 9	AA9	A	159	166	Right-handed alpha
Helix 10	AB1	A	167	172	Right-handed alpha
Helix 11	AB2	A	176	180	Right-handed 310
Helix 12	AB3	A	184	189	Right-handed alpha
Helix 13	AB4	A	192	207	Right-handed alpha
Helix 14	AB5	A	219	243	Right-handed alpha
Helix 15	AB6	A	251	263	Right-handed alpha
Helix 16	AB7	A	266	278	Right-handed alpha
Helix 17	AB8	A	284	290	Right-handed alpha
Helix 18	AB9	A	301	306	Right-handed 310
Helix 19	AC1	A	307	316	Right-handed alpha
Helix 20	AC2	A	341	345	Right-handed 310
Helix 21	AC3	A	373	375	Right-handed 310
Helix 22	AC4	A	431	439	Right-handed alpha
Helix 23	AC5	A	495	504	Right-handed alpha
Helix 24	AC6	A	506	515	Right-handed alpha
Helix 25	AC7	B	9	21	Right-handed alpha
Helix 26	AC8	B	21	35	Right-handed alpha
Helix 27	AC9	B	36	38	Right-handed 310
Helix 28	AD1	B	40	46	Right-handed alpha
Helix 29	AD2	B	52	60	Right-handed alpha
Helix 30	AD3	B	64	77	Right-handed alpha
Helix 31	AD4	B	80	84	Right-handed 310
Helix 32	AD5	B	109	131	Right-handed alpha
Helix 33	AD6	B	159	166	Right-handed alpha
Helix 34	AD7	B	167	172	Right-handed alpha
Helix 35	AD8	B	176	180	Right-handed 310
Helix 36	AD9	B	184	190	Right-handed alpha
Helix 37	AE1	B	192	207	Right-handed alpha
Helix 38	AE2	B	219	231	Right-handed alpha
Helix 39	AE3	B	232	243	Right-handed alpha
Helix 40	AE4	B	251	263	Right-handed alpha
Helix 41	AE5	B	266	278	Right-handed alpha
Helix 42	AE6	B	284	290	Right-handed alpha
Helix 43	AE7	B	301	306	Right-handed 310
Helix 44	AE8	B	307	316	Right-handed alpha
Helix 45	AE9	B	341	345	Right-handed 310
Helix 46	AF1	B	373	375	Right-handed 310
Helix 47	AF2	B	431	442	Right-handed alpha
Helix 48	AF3	B	495	504	Right-handed alpha
Helix 49	AF4	B	506	515	Right-handed alpha

There are 12 sheets in PDB entry 6OMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	108	first strand
Strand 2	A	91	99	anti-parallel
Strand 3	A	156	158	parallel
Strand 4	A	149	150	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	141	first strand
Strand 2	A	211	218	parallel
Strand 3	A	295	299	parallel
Strand 4	A	320	321	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	326	first strand
Strand 2	A	331	334	anti-parallel
Strand 3	A	347	349	anti-parallel
Strand 4	A	409	417	anti-parallel
Strand 5	A	398	406	anti-parallel
Strand 6	A	380	386	anti-parallel
Strand 7	A	355	360	anti-parallel
Strand 8	A	370	371	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	326	first strand
Strand 2	A	331	334	anti-parallel
Strand 3	A	347	349	anti-parallel
Strand 4	A	409	417	anti-parallel
Strand 5	A	398	406	anti-parallel
Strand 6	A	380	386	anti-parallel
Strand 7	A	394	395	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	422	first strand
Strand 2	A	429	430	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	460	first strand
Strand 2	A	467	471	anti-parallel
Strand 3	A	523	525	parallel
Strand 4	A	572	573	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	108	first strand
Strand 2	B	91	99	anti-parallel
Strand 3	B	156	158	parallel
Strand 4	B	149	150	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	141	first strand
Strand 2	B	211	218	parallel
Strand 3	B	295	299	parallel
Strand 4	B	320	321	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	326	first strand
Strand 2	B	331	334	anti-parallel
Strand 3	B	347	349	anti-parallel
Strand 4	B	409	417	anti-parallel
Strand 5	B	398	406	anti-parallel
Strand 6	B	380	386	anti-parallel
Strand 7	B	355	360	anti-parallel
Strand 8	B	370	371	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	326	first strand
Strand 2	B	331	334	anti-parallel
Strand 3	B	347	349	anti-parallel
Strand 4	B	409	417	anti-parallel
Strand 5	B	398	406	anti-parallel
Strand 6	B	380	386	anti-parallel
Strand 7	B	394	395	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	422	first strand
Strand 2	B	429	430	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	460	first strand
Strand 2	B	467	471	anti-parallel
Strand 3	B	523	525	parallel
Strand 4	B	572	573	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OMS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OMS