Analysis of interatomic Contacts of Structural Units in PDB entry:
6OMV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OMV entry

There are 6 chains in PDB entry 6OMV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	T -7	G 9
F	C -9	A 2
A	MET 120	LYS 234
B	MET 1	LYS 1227
G	A 3	G 31
C	MET 120	HIS 233

There are 57 helices in PDB entry 6OMV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	123	126	Right-handed 310
Helix 2	AA2	A	127	148	Right-handed alpha
Helix 3	AA3	A	151	155	Right-handed 310
Helix 4	AA4	A	200	204	Right-handed 310
Helix 5	AA5	A	225	233	Right-handed alpha
Helix 6	AA6	B	26	34	Right-handed alpha
Helix 7	AA7	B	36	66	Right-handed alpha
Helix 8	AA8	B	67	69	Right-handed 310
Helix 9	AA9	B	73	81	Right-handed alpha
Helix 10	AB1	B	82	84	Right-handed 310
Helix 11	AB2	B	90	112	Right-handed alpha
Helix 12	AB3	B	121	126	Right-handed alpha
Helix 13	AB4	B	126	131	Right-handed alpha
Helix 14	AB5	B	134	142	Right-handed alpha
Helix 15	AB6	B	147	150	Right-handed 310
Helix 16	AB7	B	151	157	Right-handed alpha
Helix 17	AB8	B	171	178	Right-handed alpha
Helix 18	AB9	B	179	193	Right-handed alpha
Helix 19	AC1	B	202	207	Right-handed alpha
Helix 20	AC2	B	230	242	Right-handed alpha
Helix 21	AC3	B	254	260	Right-handed alpha
Helix 22	AC4	B	296	308	Right-handed alpha
Helix 23	AC5	B	312	327	Right-handed alpha
Helix 24	AC6	B	343	352	Right-handed alpha
Helix 25	AC7	B	356	370	Right-handed alpha
Helix 26	AC8	B	378	392	Right-handed alpha
Helix 27	AC9	B	397	404	Right-handed alpha
Helix 28	AD1	B	410	431	Right-handed alpha
Helix 29	AD2	B	452	472	Right-handed alpha
Helix 30	AD3	B	484	498	Right-handed alpha
Helix 31	AD4	B	498	512	Right-handed alpha
Helix 32	AD5	B	538	543	Right-handed alpha
Helix 33	AD6	B	588	598	Right-handed alpha
Helix 34	AD7	B	601	606	Right-handed alpha
Helix 35	AD8	B	610	619	Right-handed alpha
Helix 36	AD9	B	630	643	Right-handed alpha
Helix 37	AE1	B	644	646	Right-handed 310
Helix 38	AE2	B	666	676	Right-handed alpha
Helix 39	AE3	B	687	697	Right-handed alpha
Helix 40	AE4	B	718	727	Right-handed alpha
Helix 41	AE5	B	786	790	Right-handed 310
Helix 42	AE6	B	811	823	Right-handed alpha
Helix 43	AE7	B	872	885	Right-handed alpha
Helix 44	AE8	B	890	919	Right-handed alpha
Helix 45	AE9	B	939	955	Right-handed alpha
Helix 46	AF1	B	1020	1030	Right-handed alpha
Helix 47	AF2	B	1091	1103	Right-handed alpha
Helix 48	AF3	B	1111	1116	Right-handed alpha
Helix 49	AF4	B	1120	1135	Right-handed alpha
Helix 50	AF5	B	1164	1169	Right-handed alpha
Helix 51	AF6	B	1178	1201	Right-handed alpha
Helix 52	AF7	B	1205	1209	Right-handed 310
Helix 53	AF8	B	1214	1224	Right-handed alpha
Helix 54	AF9	C	123	149	Right-handed alpha
Helix 55	AG1	C	151	155	Right-handed 310
Helix 56	AG2	C	200	204	Right-handed 310
Helix 57	AG3	C	226	231	Right-handed alpha

There are 13 sheets in PDB entry 6OMV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	207	first strand
Strand 2	A	196	198	anti-parallel
Strand 3	A	180	185	anti-parallel
Strand 4	A	157	161	anti-parallel
Strand 5	A	209	212	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	188	first strand
Strand 2	B	757	759	anti-parallel
Strand 3	B	783	784	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	522	first strand
Strand 2	B	743	747	anti-parallel
Strand 3	B	793	802	anti-parallel
Strand 4	B	13	23	anti-parallel
Strand 5	B	700	705	anti-parallel
Strand 6	B	552	557	anti-parallel
Strand 7	B	545	549	anti-parallel
Strand 8	B	577	581	anti-parallel
Strand 9	B	682	686	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	522	first strand
Strand 2	B	743	747	anti-parallel
Strand 3	B	793	802	anti-parallel
Strand 4	B	736	737	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	339	first strand
Strand 2	B	394	396	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	764	766	first strand
Strand 2	B	776	778	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	850	855	first strand
Strand 2	B	840	844	anti-parallel
Strand 3	B	828	830	anti-parallel
Strand 4	B	921	925	parallel
Strand 5	B	993	996	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	858	863	first strand
Strand 2	B	866	871	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1031	1037	first strand
Strand 2	B	1042	1048	anti-parallel
Strand 3	B	1062	1065	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1070	1073	first strand
Strand 2	B	1087	1090	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1139	1140	first strand
Strand 2	B	1148	1149	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	212	213	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	187	first strand
Strand 2	C	194	198	anti-parallel
Strand 3	C	206	207	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OMV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OMV