Analysis of interatomic Contacts of Structural Units in PDB entry:
6ONC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ONC entry

There are 3 chains in PDB entry 6ONC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 4	THR 628
B	SER 4	SER 629
C	SER 4	ALA 76

There are136 helices in PDB entry 6ONC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	11	Right-handed alpha
Helix 2	AA2	A	13	27	Right-handed alpha
Helix 3	AA3	A	30	38	Right-handed alpha
Helix 4	AA4	A	42	48	Right-handed alpha
Helix 5	AA5	A	77	114	Right-handed alpha
Helix 6	AA6	A	123	135	Right-handed alpha
Helix 7	AA7	A	143	159	Right-handed alpha
Helix 8	AA8	A	166	172	Right-handed 310
Helix 9	AA9	A	173	184	Right-handed alpha
Helix 10	AB1	A	189	201	Right-handed alpha
Helix 11	AB2	A	208	225	Right-handed alpha
Helix 12	AB3	A	226	240	Right-handed alpha
Helix 13	AB4	A	250	254	Right-handed 310
Helix 14	AB5	A	267	279	Right-handed alpha
Helix 15	AB6	A	280	290	Right-handed alpha
Helix 16	AB7	A	301	312	Right-handed alpha
Helix 17	AB8	A	318	320	Right-handed 310
Helix 18	AB9	A	321	328	Right-handed alpha
Helix 19	AC1	A	343	351	Right-handed alpha
Helix 20	AC2	A	377	394	Right-handed alpha
Helix 21	AC3	A	395	396	Right-handed 310
Helix 22	AC4	A	397	401	Right-handed 310
Helix 23	AC5	A	415	423	Right-handed alpha
Helix 24	AC6	A	427	436	Right-handed alpha
Helix 25	AC7	A	456	469	Right-handed alpha
Helix 26	AC8	A	478	486	Right-handed alpha
Helix 27	AC9	A	490	497	Right-handed 310
Helix 28	AD1	A	498	509	Right-handed alpha
Helix 29	AD2	A	521	537	Right-handed alpha
Helix 30	AD3	A	539	543	Right-handed 310
Helix 31	AD4	A	554	567	Right-handed alpha
Helix 32	AD5	A	582	591	Right-handed alpha
Helix 33	AD6	A	591	598	Right-handed alpha
Helix 34	AD7	A	606	626	Right-handed alpha
Helix 35	AD8	B	5	9	Right-handed alpha
Helix 36	AD9	B	13	27	Right-handed alpha
Helix 37	AE1	B	30	38	Right-handed alpha
Helix 38	AE2	B	42	48	Right-handed alpha
Helix 39	AE3	B	77	114	Right-handed alpha
Helix 40	AE4	B	123	134	Right-handed alpha
Helix 41	AE5	B	143	159	Right-handed alpha
Helix 42	AE6	B	166	172	Right-handed 310
Helix 43	AE7	B	173	184	Right-handed alpha
Helix 44	AE8	B	189	201	Right-handed alpha
Helix 45	AE9	B	208	225	Right-handed alpha
Helix 46	AF1	B	226	240	Right-handed alpha
Helix 47	AF2	B	250	254	Right-handed 310
Helix 48	AF3	B	267	279	Right-handed alpha
Helix 49	AF4	B	280	290	Right-handed alpha
Helix 50	AF5	B	301	312	Right-handed alpha
Helix 51	AF6	B	318	320	Right-handed 310
Helix 52	AF7	B	321	328	Right-handed alpha
Helix 53	AF8	B	343	351	Right-handed alpha
Helix 54	AF9	B	377	394	Right-handed alpha
Helix 55	AG1	B	395	396	Right-handed 310
Helix 56	AG2	B	397	401	Right-handed 310
Helix 57	AG3	B	415	423	Right-handed alpha
Helix 58	AG4	B	427	436	Right-handed alpha
Helix 59	AG5	B	456	469	Right-handed alpha
Helix 60	AG6	B	478	486	Right-handed alpha
Helix 61	AG7	B	490	497	Right-handed 310
Helix 62	AG8	B	498	509	Right-handed alpha
Helix 63	AG9	B	521	537	Right-handed alpha
Helix 64	AH1	B	539	543	Right-handed 310
Helix 65	AH2	B	554	567	Right-handed alpha
Helix 66	AH3	B	582	591	Right-handed alpha
Helix 67	AH4	B	593	598	Right-handed alpha
Helix 68	AH5	B	606	625	Right-handed alpha
Helix 69	AH6	C	5	11	Right-handed alpha
Helix 70	AH7	C	13	27	Right-handed alpha
Helix 71	AH8	C	30	38	Right-handed alpha
Helix 72	AH9	C	42	48	Right-handed alpha
Helix 73	AI1	C	77	113	Right-handed alpha
Helix 74	AI2	C	123	135	Right-handed alpha
Helix 75	AI3	C	143	159	Right-handed alpha
Helix 76	AI4	C	166	172	Right-handed 310
Helix 77	AI5	C	173	183	Right-handed alpha
Helix 78	AI6	C	189	201	Right-handed alpha
Helix 79	AI7	C	208	225	Right-handed alpha
Helix 80	AI8	C	226	240	Right-handed alpha
Helix 81	AI9	C	250	254	Right-handed 310
Helix 82	AJ1	C	267	279	Right-handed alpha
Helix 83	AJ2	C	280	290	Right-handed alpha
Helix 84	AJ3	C	301	312	Right-handed alpha
Helix 85	AJ4	C	318	320	Right-handed 310
Helix 86	AJ5	C	321	328	Right-handed alpha
Helix 87	AJ6	C	343	352	Right-handed alpha
Helix 88	AJ7	C	377	394	Right-handed alpha
Helix 89	AJ8	C	395	396	Right-handed 310
Helix 90	AJ9	C	397	401	Right-handed 310
Helix 91	AK1	C	415	423	Right-handed alpha
Helix 92	AK2	C	427	436	Right-handed alpha
Helix 93	AK3	C	456	469	Right-handed alpha
Helix 94	AK4	C	478	486	Right-handed alpha
Helix 95	AK5	C	490	497	Right-handed 310
Helix 96	AK6	C	498	509	Right-handed alpha
Helix 97	AK7	C	521	537	Right-handed alpha
Helix 98	AK8	C	539	543	Right-handed 310
Helix 99	AK9	C	554	567	Right-handed alpha
Helix 100	AL1	C	582	591	Right-handed alpha
Helix 101	AL2	C	593	598	Right-handed alpha
Helix 102	AL3	C	606	625	Right-handed alpha
Helix 103	AL4	D	4	11	Right-handed alpha
Helix 104	AL5	D	13	27	Right-handed alpha
Helix 105	AL6	D	30	38	Right-handed alpha
Helix 106	AL7	D	42	48	Right-handed alpha
Helix 107	AL8	D	77	114	Right-handed alpha
Helix 108	AL9	D	123	134	Right-handed alpha
Helix 109	AM1	D	143	158	Right-handed alpha
Helix 110	AM2	D	166	172	Right-handed 310
Helix 111	AM3	D	173	184	Right-handed alpha
Helix 112	AM4	D	189	201	Right-handed alpha
Helix 113	AM5	D	208	225	Right-handed alpha
Helix 114	AM6	D	226	240	Right-handed alpha
Helix 115	AM7	D	250	254	Right-handed 310
Helix 116	AM8	D	267	279	Right-handed alpha
Helix 117	AM9	D	280	290	Right-handed alpha
Helix 118	AN1	D	301	312	Right-handed alpha
Helix 119	AN2	D	318	320	Right-handed 310
Helix 120	AN3	D	321	328	Right-handed alpha
Helix 121	AN4	D	343	351	Right-handed alpha
Helix 122	AN5	D	377	394	Right-handed alpha
Helix 123	AN6	D	395	396	Right-handed 310
Helix 124	AN7	D	397	401	Right-handed 310
Helix 125	AN8	D	415	423	Right-handed alpha
Helix 126	AN9	D	427	436	Right-handed alpha
Helix 127	AO1	D	456	469	Right-handed alpha
Helix 128	AO2	D	477	486	Right-handed alpha
Helix 129	AO3	D	490	497	Right-handed 310
Helix 130	AO4	D	498	509	Right-handed alpha
Helix 131	AO5	D	521	537	Right-handed alpha
Helix 132	AO6	D	539	543	Right-handed 310
Helix 133	AO7	D	554	567	Right-handed alpha
Helix 134	AO8	D	582	591	Right-handed alpha
Helix 135	AO9	D	591	598	Right-handed alpha
Helix 136	AP1	D	606	625	Right-handed alpha

There are 16 sheets in PDB entry 6ONC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	59	60	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	249	first strand
Strand 2	A	408	412	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	317	first strand
Strand 2	A	295	300	parallel
Strand 3	A	259	264	parallel
Strand 4	A	331	336	parallel
Strand 5	A	355	358	parallel
Strand 6	A	369	370	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	517	first strand
Strand 2	A	471	476	parallel
Strand 3	A	441	445	parallel
Strand 4	A	545	549	parallel
Strand 5	A	571	573	parallel
Strand 6	A	601	603	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	51	first strand
Strand 2	B	59	60	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	249	first strand
Strand 2	B	408	412	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	317	first strand
Strand 2	B	294	300	parallel
Strand 3	B	258	264	parallel
Strand 4	B	333	336	parallel
Strand 5	B	355	358	parallel
Strand 6	B	369	370	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	513	517	first strand
Strand 2	B	471	476	parallel
Strand 3	B	441	445	parallel
Strand 4	B	545	549	parallel
Strand 5	B	571	573	parallel
Strand 6	B	601	603	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	51	first strand
Strand 2	C	59	60	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	249	first strand
Strand 2	C	408	412	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	317	first strand
Strand 2	C	294	300	parallel
Strand 3	C	258	264	parallel
Strand 4	C	333	336	parallel
Strand 5	C	355	358	parallel
Strand 6	C	369	370	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	513	517	first strand
Strand 2	C	471	476	parallel
Strand 3	C	441	445	parallel
Strand 4	C	545	549	parallel
Strand 5	C	571	573	parallel
Strand 6	C	601	603	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	51	first strand
Strand 2	D	59	60	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	249	first strand
Strand 2	D	408	412	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	315	317	first strand
Strand 2	D	295	300	parallel
Strand 3	D	259	264	parallel
Strand 4	D	333	336	parallel
Strand 5	D	355	358	parallel
Strand 6	D	369	370	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	513	517	first strand
Strand 2	D	471	476	parallel
Strand 3	D	441	445	parallel
Strand 4	D	545	549	parallel
Strand 5	D	571	573	parallel
Strand 6	D	601	603	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ONC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ONC