Analysis of interatomic Contacts of Structural Units in PDB entry:
6OOC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OOC entry

There are 6 chains in PDB entry 6OOC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 23LYS 189
B
 TYR 26ARG 212
C
 TYR 26LYS 189
D
 ALA 23GLY 190
E
 THR 24GLU 191
F
 THR 24GLU 197
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6OOC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
123 127Right-handed 310
Helix 2
AA2
A
154 157Right-handed 310
Helix 3
AA3
B
123 127Right-handed 310
Helix 4
AA4
B
154 157Right-handed 310
Helix 5
AA5
C
123 127Right-handed 310
Helix 6
AA6
C
154 157Right-handed 310
Helix 7
AA7
D
35 39Right-handed 310
Helix 8
AA8
D
123 127Right-handed 310
Helix 9
AA9
D
154 157Right-handed 310
Helix 10
AB1
E
123 127Right-handed 310
Helix 11
AB2
E
154 156Right-handed 310
Helix 12
AB3
F
32 37Right-handed alpha
Helix 13
AB4
F
123 127Right-handed 310
Helix 14
AB5
F
154 157Right-handed 310
Helix 15
AB6
F
191 196Right-handed alpha
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There are 11 sheets in PDB entry 6OOC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
F
39 50anti-parallel
Strand 3
F
78 86anti-parallel
Strand 4
F
59 63anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
F
39 50anti-parallel
Strand 3
F
177 188anti-parallel
Strand 4
F
160 170anti-parallel
Strand 5
F
144 152anti-parallel
Strand 6
F
130 137anti-parallel
Strand 7
F
113 121anti-parallel
Strand 8
F
95 105anti-parallel
Strand 9
F
78 86anti-parallel
Strand 10
F
59 63anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
78 86anti-parallel
Strand 3
A
39 50anti-parallel
Strand 4
B
27 28anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
78 86anti-parallel
Strand 3
A
95 105anti-parallel
Strand 4
A
113 121anti-parallel
Strand 5
A
130 137anti-parallel
Strand 6
A
145 153anti-parallel
Strand 7
A
160 170anti-parallel
Strand 8
A
177 188anti-parallel
Strand 9
A
39 50anti-parallel
Strand 10
B
27 28anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 63first strand
Strand 2
B
78 86anti-parallel
Strand 3
B
40 50anti-parallel
Strand 4
C
27 29anti-parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 63first strand
Strand 2
B
78 86anti-parallel
Strand 3
B
95 105anti-parallel
Strand 4
B
113 121anti-parallel
Strand 5
B
130 136anti-parallel
Strand 6
B
145 153anti-parallel
Strand 7
B
160 170anti-parallel
Strand 8
B
177 187anti-parallel
Strand 9
B
40 50anti-parallel
Strand 10
C
27 29anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 63first strand
Strand 2
C
78 86anti-parallel
Strand 3
C
39 50anti-parallel
Strand 4
D
26 29anti-parallel
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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 63first strand
Strand 2
C
78 86anti-parallel
Strand 3
C
95 105anti-parallel
Strand 4
C
113 121anti-parallel
Strand 5
C
130 137anti-parallel
Strand 6
C
145 153anti-parallel
Strand 7
C
160 170anti-parallel
Strand 8
C
177 188anti-parallel
Strand 9
C
39 50anti-parallel
Strand 10
D
26 29anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 63first strand
Strand 2
D
78 86anti-parallel
Strand 3
D
40 50anti-parallel
Strand 4
E
26 28anti-parallel
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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 63first strand
Strand 2
D
78 86anti-parallel
Strand 3
D
95 105anti-parallel
Strand 4
D
113 121anti-parallel
Strand 5
D
130 137anti-parallel
Strand 6
D
145 152anti-parallel
Strand 7
D
160 170anti-parallel
Strand 8
D
177 187anti-parallel
Strand 9
D
40 50anti-parallel
Strand 10
E
26 28anti-parallel
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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
59 63first strand
Strand 2
E
78 86anti-parallel
Strand 3
E
95 105anti-parallel
Strand 4
E
113 121anti-parallel
Strand 5
E
130 137anti-parallel
Strand 6
E
145 153anti-parallel
Strand 7
E
157 171anti-parallel
Strand 8
E
176 189anti-parallel
Strand 9
E
38 50anti-parallel
Strand 10
E
78 86anti-parallel
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