Analysis of interatomic Contacts of Structural Units in PDB entry:
6OP5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OP5 entry

There are 7 chains in PDB entry 6OP5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 9	PRO 391
B	ALA 10	PRO 391
C	ALA 10	GLY 163
C	PHE 165	PRO 391
D	ALA 10	PRO 391
E	ALA 10	PRO 391
F	ALA 10	PRO 391

There are 89 helices in PDB entry 6OP5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	44	Right-handed alpha
Helix 2	AA2	A	49	63	Right-handed alpha
Helix 3	AA3	A	73	79	Right-handed alpha
Helix 4	AA4	A	80	84	Right-handed 310
Helix 5	AA5	A	90	118	Right-handed alpha
Helix 6	AA6	A	120	124	Right-handed 310
Helix 7	AA7	A	139	149	Right-handed alpha
Helix 8	AA8	A	162	164	Right-handed 310
Helix 9	AA9	A	165	181	Right-handed alpha
Helix 10	AB1	A	209	214	Right-handed alpha
Helix 11	AB2	A	271	289	Right-handed alpha
Helix 12	AB3	A	290	292	Right-handed 310
Helix 13	AB4	A	307	319	Right-handed alpha
Helix 14	AB5	A	325	336	Right-handed alpha
Helix 15	AB6	A	340	357	Right-handed alpha
Helix 16	AB7	B	35	44	Right-handed alpha
Helix 17	AB8	B	49	62	Right-handed alpha
Helix 18	AB9	B	73	80	Right-handed alpha
Helix 19	AC1	B	81	85	Right-handed 310
Helix 20	AC2	B	90	118	Right-handed alpha
Helix 21	AC3	B	120	124	Right-handed 310
Helix 22	AC4	B	139	149	Right-handed alpha
Helix 23	AC5	B	165	180	Right-handed alpha
Helix 24	AC6	B	207	214	Right-handed alpha
Helix 25	AC7	B	271	289	Right-handed alpha
Helix 26	AC8	B	290	292	Right-handed 310
Helix 27	AC9	B	307	318	Right-handed alpha
Helix 28	AD1	B	325	335	Right-handed alpha
Helix 29	AD2	B	338	340	Right-handed 310
Helix 30	AD3	B	341	357	Right-handed alpha
Helix 31	AD4	C	35	44	Right-handed alpha
Helix 32	AD5	C	49	62	Right-handed alpha
Helix 33	AD6	C	73	80	Right-handed alpha
Helix 34	AD7	C	81	84	Right-handed 310
Helix 35	AD8	C	90	118	Right-handed alpha
Helix 36	AD9	C	120	124	Right-handed 310
Helix 37	AE1	C	139	149	Right-handed alpha
Helix 38	AE2	C	165	181	Right-handed alpha
Helix 39	AE3	C	207	216	Right-handed alpha
Helix 40	AE4	C	271	277	Right-handed alpha
Helix 41	AE5	C	279	289	Right-handed alpha
Helix 42	AE6	C	307	319	Right-handed alpha
Helix 43	AE7	C	325	336	Right-handed alpha
Helix 44	AE8	C	338	340	Right-handed 310
Helix 45	AE9	C	341	357	Right-handed alpha
Helix 46	AF1	D	35	44	Right-handed alpha
Helix 47	AF2	D	49	63	Right-handed alpha
Helix 48	AF3	D	73	79	Right-handed alpha
Helix 49	AF4	D	80	84	Right-handed 310
Helix 50	AF5	D	90	118	Right-handed alpha
Helix 51	AF6	D	120	124	Right-handed 310
Helix 52	AF7	D	139	149	Right-handed alpha
Helix 53	AF8	D	165	180	Right-handed alpha
Helix 54	AF9	D	207	216	Right-handed alpha
Helix 55	AG1	D	271	289	Right-handed alpha
Helix 56	AG2	D	290	292	Right-handed 310
Helix 57	AG3	D	307	319	Right-handed alpha
Helix 58	AG4	D	325	336	Right-handed alpha
Helix 59	AG5	D	340	357	Right-handed alpha
Helix 60	AG6	E	35	44	Right-handed alpha
Helix 61	AG7	E	49	62	Right-handed alpha
Helix 62	AG8	E	73	78	Right-handed alpha
Helix 63	AG9	E	90	118	Right-handed alpha
Helix 64	AH1	E	120	124	Right-handed 310
Helix 65	AH2	E	139	148	Right-handed alpha
Helix 66	AH3	E	162	164	Right-handed 310
Helix 67	AH4	E	165	181	Right-handed alpha
Helix 68	AH5	E	208	216	Right-handed alpha
Helix 69	AH6	E	271	288	Right-handed alpha
Helix 70	AH7	E	307	318	Right-handed alpha
Helix 71	AH8	E	321	324	Right-handed 310
Helix 72	AH9	E	325	336	Right-handed alpha
Helix 73	AI1	E	340	357	Right-handed alpha
Helix 74	AI2	F	35	44	Right-handed alpha
Helix 75	AI3	F	49	62	Right-handed alpha
Helix 76	AI4	F	73	79	Right-handed alpha
Helix 77	AI5	F	80	85	Right-handed 310
Helix 78	AI6	F	90	118	Right-handed alpha
Helix 79	AI7	F	120	124	Right-handed 310
Helix 80	AI8	F	139	149	Right-handed alpha
Helix 81	AI9	F	162	164	Right-handed 310
Helix 82	AJ1	F	165	180	Right-handed alpha
Helix 83	AJ2	F	193	197	Right-handed 310
Helix 84	AJ3	F	206	210	Right-handed 310
Helix 85	AJ4	F	211	215	Right-handed 310
Helix 86	AJ5	F	271	288	Right-handed alpha
Helix 87	AJ6	F	307	318	Right-handed alpha
Helix 88	AJ7	F	325	336	Right-handed alpha
Helix 89	AJ8	F	340	357	Right-handed alpha

There are 18 sheets in PDB entry 6OP5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	160	first strand
Strand 2	A	126	131	parallel
Strand 3	A	185	192	parallel
Strand 4	A	219	227	anti-parallel
Strand 5	A	17	25	anti-parallel
Strand 6	A	238	247	anti-parallel
Strand 7	A	379	387	anti-parallel
Strand 8	A	368	375	anti-parallel
Strand 9	A	300	303	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	67	69	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	137	first strand
Strand 2	B	255	260	anti-parallel
Strand 3	B	263	268	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	268	first strand
Strand 2	A	255	260	anti-parallel
Strand 3	B	136	137	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	160	first strand
Strand 2	B	126	131	parallel
Strand 3	B	185	192	parallel
Strand 4	B	219	227	anti-parallel
Strand 5	B	17	25	anti-parallel
Strand 6	B	238	247	anti-parallel
Strand 7	B	379	387	anti-parallel
Strand 8	B	368	375	anti-parallel
Strand 9	B	300	303	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	32	first strand
Strand 2	B	67	69	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	160	first strand
Strand 2	C	126	131	parallel
Strand 3	C	186	192	parallel
Strand 4	C	219	227	anti-parallel
Strand 5	C	17	25	anti-parallel
Strand 6	C	238	247	anti-parallel
Strand 7	C	379	387	anti-parallel
Strand 8	C	368	375	anti-parallel
Strand 9	C	300	303	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	32	first strand
Strand 2	C	67	69	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	260	first strand
Strand 2	C	263	268	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	160	first strand
Strand 2	D	126	131	parallel
Strand 3	D	185	192	parallel
Strand 4	D	219	226	anti-parallel
Strand 5	D	17	25	anti-parallel
Strand 6	D	238	247	anti-parallel
Strand 7	D	379	386	anti-parallel
Strand 8	D	368	375	anti-parallel
Strand 9	D	300	303	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	32	first strand
Strand 2	D	67	69	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	260	first strand
Strand 2	D	263	268	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	155	160	first strand
Strand 2	E	126	131	parallel
Strand 3	E	185	192	parallel
Strand 4	E	219	226	anti-parallel
Strand 5	E	18	25	anti-parallel
Strand 6	E	238	247	anti-parallel
Strand 7	E	379	387	anti-parallel
Strand 8	E	368	375	anti-parallel
Strand 9	E	300	303	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	32	first strand
Strand 2	E	67	69	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	257	260	first strand
Strand 2	E	263	266	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	155	160	first strand
Strand 2	F	126	131	parallel
Strand 3	F	185	192	parallel
Strand 4	F	219	227	anti-parallel
Strand 5	F	17	25	anti-parallel
Strand 6	F	238	247	anti-parallel
Strand 7	F	379	387	anti-parallel
Strand 8	F	368	375	anti-parallel
Strand 9	F	300	303	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	32	first strand
Strand 2	F	67	69	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	257	260	first strand
Strand 2	F	263	266	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OP5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OP5