Analysis of interatomic Contacts of Structural Units in PDB entry:
6OPM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OPM entry

There are 4 chains in PDB entry 6OPM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MSE 1	ILE 341
B	MSE 1	LEU 354
C	MSE 1	VAL 359
D	MSE 1	SER 184

There are 59 helices in PDB entry 6OPM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	68	Right-handed alpha
Helix 2	AA2	A	93	105	Right-handed alpha
Helix 3	AA3	A	105	131	Right-handed alpha
Helix 4	AA4	A	132	135	Right-handed 310
Helix 5	AA5	A	142	151	Right-handed alpha
Helix 6	AA6	A	154	174	Right-handed alpha
Helix 7	AA7	A	175	177	Right-handed 310
Helix 8	AA8	A	178	182	Right-handed 310
Helix 9	AA9	A	198	223	Right-handed alpha
Helix 10	AB1	A	239	247	Right-handed alpha
Helix 11	AB2	A	250	262	Right-handed alpha
Helix 12	AB3	A	267	269	Right-handed 310
Helix 13	AB4	A	282	298	Right-handed alpha
Helix 14	AB5	A	310	326	Right-handed alpha
Helix 15	AB6	B	59	68	Right-handed alpha
Helix 16	AB7	B	92	105	Right-handed alpha
Helix 17	AB8	B	105	130	Right-handed alpha
Helix 18	AB9	B	141	152	Right-handed alpha
Helix 19	AC1	B	154	175	Right-handed alpha
Helix 20	AC2	B	176	177	Right-handed 310
Helix 21	AC3	B	178	182	Right-handed 310
Helix 22	AC4	B	198	221	Right-handed alpha
Helix 23	AC5	B	239	247	Right-handed alpha
Helix 24	AC6	B	249	264	Right-handed alpha
Helix 25	AC7	B	267	269	Right-handed 310
Helix 26	AC8	B	282	299	Right-handed alpha
Helix 27	AC9	B	310	327	Right-handed alpha
Helix 28	AD1	B	344	353	Right-handed alpha
Helix 29	AD2	C	59	68	Right-handed alpha
Helix 30	AD3	C	92	105	Right-handed alpha
Helix 31	AD4	C	105	131	Right-handed alpha
Helix 32	AD5	C	132	134	Right-handed 310
Helix 33	AD6	C	142	152	Right-handed alpha
Helix 34	AD7	C	154	174	Right-handed alpha
Helix 35	AD8	C	175	177	Right-handed 310
Helix 36	AD9	C	178	182	Right-handed 310
Helix 37	AE1	C	198	222	Right-handed alpha
Helix 38	AE2	C	239	247	Right-handed alpha
Helix 39	AE3	C	249	264	Right-handed alpha
Helix 40	AE4	C	267	269	Right-handed 310
Helix 41	AE5	C	282	298	Right-handed alpha
Helix 42	AE6	C	310	326	Right-handed alpha
Helix 43	AE7	C	348	357	Right-handed alpha
Helix 44	AE8	D	59	68	Right-handed alpha
Helix 45	AE9	D	90	92	Right-handed 310
Helix 46	AF1	D	93	105	Right-handed alpha
Helix 47	AF2	D	105	131	Right-handed alpha
Helix 48	AF3	D	142	151	Right-handed alpha
Helix 49	AF4	D	154	174	Right-handed alpha
Helix 50	AF5	D	178	182	Right-handed 310
Helix 51	AF6	D	198	222	Right-handed alpha
Helix 52	AF7	D	239	247	Right-handed alpha
Helix 53	AF8	D	249	264	Right-handed alpha
Helix 54	AF9	D	267	269	Right-handed 310
Helix 55	AG1	D	282	299	Right-handed alpha
Helix 56	AG2	D	310	326	Right-handed alpha
Helix 57	AG3	H	8	14	Right-handed alpha
Helix 58	AG4	J	3	10	Right-handed alpha
Helix 59	AG5	J	11	13	Right-handed 310

There are 14 sheets in PDB entry 6OPM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	6	first strand
Strand 2	A	45	50	parallel
Strand 3	A	71	75	parallel
Strand 4	A	81	85	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	19	23	anti-parallel
Strand 3	A	11	16	anti-parallel
Strand 4	A	55	58	parallel
Strand 5	B	55	58	anti-parallel
Strand 6	B	11	16	parallel
Strand 7	B	19	23	anti-parallel
Strand 8	B	35	38	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	279	281	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	302	first strand
Strand 2	A	307	309	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	47	50	parallel
Strand 3	B	71	75	parallel
Strand 4	B	81	85	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	273	first strand
Strand 2	B	279	281	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	302	first strand
Strand 2	B	307	309	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	47	50	parallel
Strand 3	C	71	75	parallel
Strand 4	C	81	85	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	19	23	anti-parallel
Strand 3	C	11	16	anti-parallel
Strand 4	C	55	58	parallel
Strand 5	D	55	58	anti-parallel
Strand 6	D	11	15	parallel
Strand 7	D	20	23	anti-parallel
Strand 8	D	35	38	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	273	first strand
Strand 2	C	279	281	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	302	first strand
Strand 2	C	307	309	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	8	first strand
Strand 2	D	47	52	parallel
Strand 3	D	71	75	parallel
Strand 4	D	81	85	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	273	first strand
Strand 2	D	279	281	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	300	303	first strand
Strand 2	D	306	309	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OPM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OPM