Analysis of interatomic Contacts of Structural Units in PDB entry:
6OQ7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OQ7 entry

There are 2 chains in PDB entry 6OQ7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLY 542
C
 GLN 3SER 111
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6OQ7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 13Right-handed alpha
Helix 2
AA2
A
21 36Right-handed alpha
Helix 3
AA3
A
41 63Right-handed alpha
Helix 4
AA4
A
68 90Right-handed alpha
Helix 5
AA5
A
108 122Right-handed alpha
Helix 6
AA6
A
137 157Right-handed alpha
Helix 7
AA7
A
158 161Right-handed 310
Helix 8
AA8
A
167 197Right-handed alpha
Helix 9
AA9
A
201 215Right-handed alpha
Helix 10
AB1
A
217 234Right-handed alpha
Helix 11
AB2
A
243 248Right-handed alpha
Helix 12
AB3
A
251 261Right-handed alpha
Helix 13
AB4
A
264 280Right-handed alpha
Helix 14
AB5
A
309 326Right-handed alpha
Helix 15
AB6
A
333 338Right-handed alpha
Helix 16
AB7
A
340 354Right-handed alpha
Helix 17
AB8
A
356 361Right-handed alpha
Helix 18
AB9
A
394 420Right-handed alpha
Helix 19
AC1
A
424 439Right-handed alpha
Helix 20
AC2
A
444 449Right-handed alpha
Helix 21
AC3
A
453 457Right-handed 310
Helix 22
AC4
A
465 470Right-handed alpha
Helix 23
AC5
A
471 485Right-handed alpha
Helix 24
AC6
A
495 500Right-handed alpha
Helix 25
AC7
A
501 503Right-handed 310
Helix 26
AC8
A
505 507Right-handed 310
Helix 27
AC9
A
514 518Right-handed 310
Helix 28
AD1
A
524 541Right-handed alpha
Helix 29
AD2
C
86 90Right-handed 310
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There are 5 sheets in PDB entry 6OQ7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
368 369anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
126 131parallel
Strand 3
A
97 101parallel
Strand 4
A
282 285parallel
Strand 5
A
382 390anti-parallel
Strand 6
A
375 379anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 291first strand
Strand 2
A
509 510anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
18 24anti-parallel
Strand 3
C
77 82anti-parallel
Strand 4
C
67 71anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
105 109parallel
Strand 3
C
91 96anti-parallel
Strand 4
C
34 39anti-parallel
Strand 5
C
46 51anti-parallel
Strand 6
C
57 59anti-parallel
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