Analysis of interatomic Contacts of Structural Units in PDB entry:
6OQY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OQY entry

There are 2 chains in PDB entry 6OQY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 300ALA 538
C
ASN 742ASP 752
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6OQY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
302 310Right-handed alpha
Helix 2
AA2
A
314 332Right-handed alpha
Helix 3
AA3
A
341 362Right-handed alpha
Helix 4
AA4
A
365 369Right-handed 310
Helix 5
AA5
A
370 398Right-handed alpha
Helix 6
AA6
A
413 421Right-handed alpha
Helix 7
AA7
A
421 441Right-handed alpha
Helix 8
AA8
A
444 457Right-handed alpha
Helix 9
AA9
A
466 489Right-handed alpha
Helix 10
AB1
A
494 501Right-handed alpha
Helix 11
AB2
A
501 524Right-handed alpha
Helix 12
AB3
A
530 538Right-handed alpha
Helix 13
AB4
C
743 751Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6OQY.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
402 404first strand
Strand 2
A
410 412anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il