Analysis of interatomic Contacts of Structural Units in PDB entry:
6OR8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OR8 entry

There is 1 chain in PDB entry 6OR8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2SER 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6OR8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 15Right-handed alpha
Helix 2
AA2
A
25 30Right-handed alpha
Helix 3
AA3
A
37 46Right-handed alpha
Helix 4
AA4
A
58 69Right-handed alpha
Helix 5
AA5
A
85 89Right-handed 310
Helix 6
AA6
A
90 101Right-handed alpha
Helix 7
AA7
A
113 118Right-handed alpha
Helix 8
AA8
A
128 136Right-handed alpha
Helix 9
AA9
A
146 158Right-handed alpha
Helix 10
AB1
A
170 175Right-handed alpha
Helix 11
AB2
A
177 188Right-handed alpha
Helix 12
AB3
A
200 205Right-handed alpha
Helix 13
AB4
A
212 220Right-handed alpha
Helix 14
AB5
A
221 223Right-handed 310
Helix 15
AB6
A
233 242Right-handed alpha
Helix 16
AB7
A
258 262Right-handed 310
Helix 17
AB8
A
263 274Right-handed alpha
Helix 18
AB9
A
281 299Right-handed alpha
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There are 3 sheets in PDB entry 6OR8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
16 21parallel
Strand 3
A
52 56parallel
Strand 4
A
73 75parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 124first strand
Strand 2
A
106 109parallel
Strand 3
A
140 144parallel
Strand 4
A
160 163parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
192 195parallel
Strand 3
A
225 229parallel
Strand 4
A
246 249parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il