Analysis of interatomic Contacts of Structural Units in PDB entry:
6OR9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OR9 entry

There are 4 chains in PDB entry 6OR9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 52	PHE 364
B	ASP 50	PHE 364
C	GLY 52	PHE 364
D	GLY 52	PHE 364

There are 54 helices in PDB entry 6OR9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	74	Right-handed alpha
Helix 2	AA2	A	86	100	Right-handed alpha
Helix 3	AA3	A	101	104	Right-handed 310
Helix 4	AA4	A	114	119	Right-handed 310
Helix 5	AA5	A	137	160	Right-handed alpha
Helix 6	AA6	A	171	184	Right-handed alpha
Helix 7	AA7	A	186	188	Right-handed 310
Helix 8	AA8	A	195	211	Right-handed alpha
Helix 9	AA9	A	213	215	Right-handed 310
Helix 10	AB1	A	233	235	Right-handed 310
Helix 11	AB2	A	244	246	Right-handed 310
Helix 12	AB3	A	260	278	Right-handed alpha
Helix 13	AB4	A	281	297	Right-handed alpha
Helix 14	AB5	A	341	360	Right-handed alpha
Helix 15	AB6	B	61	74	Right-handed alpha
Helix 16	AB7	B	86	100	Right-handed alpha
Helix 17	AB8	B	101	104	Right-handed 310
Helix 18	AB9	B	114	119	Right-handed 310
Helix 19	AC1	B	137	160	Right-handed alpha
Helix 20	AC2	B	171	184	Right-handed alpha
Helix 21	AC3	B	186	188	Right-handed 310
Helix 22	AC4	B	195	211	Right-handed alpha
Helix 23	AC5	B	213	215	Right-handed 310
Helix 24	AC6	B	233	235	Right-handed 310
Helix 25	AC7	B	244	246	Right-handed 310
Helix 26	AC8	B	260	278	Right-handed alpha
Helix 27	AC9	B	281	297	Right-handed alpha
Helix 28	AD1	B	341	361	Right-handed alpha
Helix 29	AD2	C	61	74	Right-handed alpha
Helix 30	AD3	C	86	102	Right-handed alpha
Helix 31	AD4	C	114	119	Right-handed 310
Helix 32	AD5	C	137	160	Right-handed alpha
Helix 33	AD6	C	171	184	Right-handed alpha
Helix 34	AD7	C	186	188	Right-handed 310
Helix 35	AD8	C	195	211	Right-handed alpha
Helix 36	AD9	C	213	215	Right-handed 310
Helix 37	AE1	C	233	235	Right-handed 310
Helix 38	AE2	C	244	246	Right-handed 310
Helix 39	AE3	C	259	278	Right-handed alpha
Helix 40	AE4	C	281	297	Right-handed alpha
Helix 41	AE5	C	341	360	Right-handed alpha
Helix 42	AE6	D	61	74	Right-handed alpha
Helix 43	AE7	D	86	102	Right-handed alpha
Helix 44	AE8	D	114	119	Right-handed 310
Helix 45	AE9	D	138	160	Right-handed alpha
Helix 46	AF1	D	171	184	Right-handed alpha
Helix 47	AF2	D	186	188	Right-handed 310
Helix 48	AF3	D	195	211	Right-handed alpha
Helix 49	AF4	D	213	215	Right-handed 310
Helix 50	AF5	D	233	235	Right-handed 310
Helix 51	AF6	D	244	246	Right-handed 310
Helix 52	AF7	D	259	278	Right-handed alpha
Helix 53	AF8	D	281	297	Right-handed alpha
Helix 54	AF9	D	341	360	Right-handed alpha

There are 16 sheets in PDB entry 6OR9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	112	first strand
Strand 2	A	79	83	parallel
Strand 3	A	55	58	parallel
Strand 4	A	123	126	parallel
Strand 5	A	164	167	parallel
Strand 6	A	190	192	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	218	first strand
Strand 2	A	237	238	anti-parallel
Strand 3	A	241	242	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	230	231	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	308	first strand
Strand 2	A	320	328	anti-parallel
Strand 3	A	331	335	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	112	first strand
Strand 2	B	79	83	parallel
Strand 3	B	55	58	parallel
Strand 4	B	123	126	parallel
Strand 5	B	164	167	parallel
Strand 6	B	190	192	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	218	first strand
Strand 2	B	237	238	anti-parallel
Strand 3	B	241	242	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	230	231	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	308	first strand
Strand 2	B	320	328	anti-parallel
Strand 3	B	331	335	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	112	first strand
Strand 2	C	79	83	parallel
Strand 3	C	55	58	parallel
Strand 4	C	123	126	parallel
Strand 5	C	164	167	parallel
Strand 6	C	190	192	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	218	first strand
Strand 2	C	237	238	anti-parallel
Strand 3	C	241	242	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	222	first strand
Strand 2	C	230	231	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	308	first strand
Strand 2	C	320	328	anti-parallel
Strand 3	C	331	335	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	112	first strand
Strand 2	D	79	83	parallel
Strand 3	D	55	58	parallel
Strand 4	D	123	126	parallel
Strand 5	D	164	167	parallel
Strand 6	D	190	192	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	218	first strand
Strand 2	D	237	238	anti-parallel
Strand 3	D	241	242	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	221	222	first strand
Strand 2	D	230	231	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	308	first strand
Strand 2	D	320	328	anti-parallel
Strand 3	D	331	335	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OR9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OR9