Analysis of interatomic Contacts of Structural Units in PDB entry:
6ORA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ORA entry

There are 2 chains in PDB entry 6ORA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 299
B
 ASP 2SER 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 6ORA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 14Right-handed alpha
Helix 2
AA2
A
25 32Right-handed alpha
Helix 3
AA3
A
37 45Right-handed alpha
Helix 4
AA4
A
58 68Right-handed alpha
Helix 5
AA5
A
85 89Right-handed 310
Helix 6
AA6
A
90 101Right-handed alpha
Helix 7
AA7
A
113 118Right-handed alpha
Helix 8
AA8
A
128 135Right-handed alpha
Helix 9
AA9
A
146 158Right-handed alpha
Helix 10
AB1
A
172 176Right-handed 310
Helix 11
AB2
A
177 188Right-handed alpha
Helix 12
AB3
A
200 206Right-handed alpha
Helix 13
AB4
A
212 220Right-handed alpha
Helix 14
AB5
A
221 223Right-handed 310
Helix 15
AB6
A
232 242Right-handed alpha
Helix 16
AB7
A
258 262Right-handed 310
Helix 17
AB8
A
263 274Right-handed alpha
Helix 18
AB9
A
281 299Right-handed alpha
Helix 19
AC1
B
3 14Right-handed alpha
Helix 20
AC2
B
25 32Right-handed alpha
Helix 21
AC3
B
37 45Right-handed alpha
Helix 22
AC4
B
46 48Right-handed 310
Helix 23
AC5
B
58 69Right-handed alpha
Helix 24
AC6
B
83 89Right-handed alpha
Helix 25
AC7
B
90 101Right-handed alpha
Helix 26
AC8
B
113 118Right-handed alpha
Helix 27
AC9
B
128 136Right-handed alpha
Helix 28
AD1
B
146 158Right-handed alpha
Helix 29
AD2
B
177 188Right-handed alpha
Helix 30
AD3
B
200 205Right-handed alpha
Helix 31
AD4
B
212 220Right-handed alpha
Helix 32
AD5
B
221 223Right-handed 310
Helix 33
AD6
B
232 242Right-handed alpha
Helix 34
AD7
B
256 261Right-handed alpha
Helix 35
AD8
B
263 273Right-handed alpha
Helix 36
AD9
B
281 298Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6ORA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
16 21parallel
Strand 3
A
52 56parallel
Strand 4
A
73 75parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 124first strand
Strand 2
A
106 109parallel
Strand 3
A
140 144parallel
Strand 4
A
160 163parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
192 195parallel
Strand 3
A
225 229parallel
Strand 4
A
246 249parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 36first strand
Strand 2
B
16 21parallel
Strand 3
B
52 56parallel
Strand 4
B
73 75parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 124first strand
Strand 2
B
106 109parallel
Strand 3
B
140 144parallel
Strand 4
B
160 163parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 210first strand
Strand 2
B
192 195parallel
Strand 3
B
225 229parallel
Strand 4
B
246 249parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il