Analysis of interatomic Contacts of Structural Units in PDB entry:
6OSV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OSV entry

There are 3 chains in PDB entry 6OSV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 SER 0LYS 110
K
 HIS 314CYS 394
H
 MET 0GLY 118
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6OSV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
L
79 83Right-handed 310
Helix 2
AA2
K
355 359Right-handed 310
Helix 3
AA3
K
367 371Right-handed 310
Helix 4
AA4
H
27 31Right-handed 310
Helix 5
AA5
H
60 63Right-handed 310
Helix 6
AA6
H
72 74Right-handed 310
Helix 7
AA7
H
85 89Right-handed 310
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There are 7 sheets in PDB entry 6OSV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 7first strand
Strand 2
L
19 24anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
105 109parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
34 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
105 109parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
100 101anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
376 378first strand
Strand 2
K
386 388anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
2 6first strand
Strand 2
H
17 24anti-parallel
Strand 3
H
76 81anti-parallel
Strand 4
H
66 71anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
9 11first strand
Strand 2
H
109 113parallel
Strand 3
H
90 98anti-parallel
Strand 4
H
32 38anti-parallel
Strand 5
H
44 50anti-parallel
Strand 6
H
56 58anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
9 11first strand
Strand 2
H
109 113parallel
Strand 3
H
90 98anti-parallel
Strand 4
H
101 105anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il