Analysis of interatomic Contacts of Structural Units in PDB entry:
6OT0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OT0 entry

There are 6 chains in PDB entry 6OT0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	SER 190	THR 553
A	MET 1	PHE 354
B	SER 2	ASN 340
G	ASN 5	ARG 62
L	MET 5	LYS 108
H	VAL 5	SER 130

There are 31 helices in PDB entry 6OT0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	223	255	Right-handed alpha
Helix 2	AA2	R	263	273	Right-handed alpha
Helix 3	AA3	R	274	281	Right-handed alpha
Helix 4	AA4	R	305	309	Right-handed 310
Helix 5	AA5	R	314	345	Right-handed alpha
Helix 6	AA6	R	356	376	Right-handed alpha
Helix 7	AA7	R	397	426	Right-handed alpha
Helix 8	AA8	R	438	494	Right-handed alpha
Helix 9	AA9	R	517	532	Right-handed alpha
Helix 10	AB1	R	540	551	Right-handed alpha
Helix 11	AB2	A	3	25	Right-handed alpha
Helix 12	AB3	A	26	31	Right-handed alpha
Helix 13	AB4	A	42	54	Right-handed alpha
Helix 14	AB5	A	65	91	Right-handed alpha
Helix 15	AB6	A	100	112	Right-handed alpha
Helix 16	AB7	A	120	131	Right-handed alpha
Helix 17	AB8	A	134	141	Right-handed alpha
Helix 18	AB9	A	142	146	Right-handed 310
Helix 19	AC1	A	151	158	Right-handed alpha
Helix 20	AC2	A	158	164	Right-handed alpha
Helix 21	AC3	A	170	178	Right-handed alpha
Helix 22	AC4	A	210	215	Right-handed 310
Helix 23	AC5	A	241	255	Right-handed alpha
Helix 24	AC6	A	271	281	Right-handed alpha
Helix 25	AC7	A	295	309	Right-handed alpha
Helix 26	AC8	A	328	352	Right-handed alpha
Helix 27	AC9	B	3	25	Right-handed alpha
Helix 28	AD1	B	29	34	Right-handed alpha
Helix 29	AD2	G	6	22	Right-handed alpha
Helix 30	AD3	G	29	43	Right-handed alpha
Helix 31	AD4	H	90	94	Right-handed 310

There are 13 sheets in PDB entry 6OT0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	197	199	first strand
Strand 2	R	213	215	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	191	first strand
Strand 2	A	194	198	anti-parallel
Strand 3	A	33	40	parallel
Strand 4	A	220	225	parallel
Strand 5	A	263	268	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	69	73	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	151	first strand
Strand 2	B	156	160	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	181	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	234	first strand
Strand 2	B	240	242	anti-parallel
Strand 3	B	251	254	anti-parallel
Strand 4	B	259	263	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	288	first strand
Strand 2	B	294	298	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	7	9	first strand
Strand 2	L	20	26	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	54	55	first strand
Strand 2	L	45	50	anti-parallel
Strand 3	L	34	39	anti-parallel
Strand 4	L	86	91	anti-parallel
Strand 5	L	103	104	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	10	first strand
Strand 2	H	22	27	anti-parallel
Strand 3	H	81	86	anti-parallel
Strand 4	H	71	75	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	14	first strand
Strand 2	H	125	128	parallel
Strand 3	H	95	102	anti-parallel
Strand 4	H	36	42	anti-parallel
Strand 5	H	48	55	anti-parallel
Strand 6	H	62	63	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OT0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OT0