Analysis of interatomic Contacts of Structural Units in PDB entry:
6OTF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OTF entry

There are 3 chains in PDB entry 6OTF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	THR 12	MET 532
A	VAL 26	MET 532
C	VAL 26	MET 532

There are 19 helices in PDB entry 6OTF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	49	54	Right-handed alpha
Helix 2	AA2	B	82	85	Right-handed 310
Helix 3	AA3	B	86	93	Right-handed alpha
Helix 4	AA4	B	94	96	Right-handed 310
Helix 5	AA5	B	137	141	Right-handed 310
Helix 6	AA6	B	233	237	Right-handed 310
Helix 7	AA7	B	456	467	Right-handed alpha
Helix 8	AA8	A	38	42	Right-handed 310
Helix 9	AA9	A	49	54	Right-handed 310
Helix 10	AB1	A	82	86	Right-handed 310
Helix 11	AB2	A	88	93	Right-handed alpha
Helix 12	AB3	A	137	141	Right-handed 310
Helix 13	AB4	A	233	237	Right-handed 310
Helix 14	AB5	A	279	283	Right-handed 310
Helix 15	AB6	A	456	467	Right-handed alpha
Helix 16	AB7	C	38	42	Right-handed 310
Helix 17	AB8	C	88	93	Right-handed alpha
Helix 18	AB9	C	136	141	Right-handed 310
Helix 19	AC1	C	456	467	Right-handed alpha

There are 22 sheets in PDB entry 6OTF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	66	first strand
Strand 2	B	198	206	anti-parallel
Strand 3	B	103	108	anti-parallel
Strand 4	B	154	158	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	80	first strand
Strand 2	B	177	182	anti-parallel
Strand 3	B	118	124	anti-parallel
Strand 4	B	143	147	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	168	first strand
Strand 2	B	98	100	anti-parallel
Strand 3	B	211	212	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	116	first strand
Strand 2	B	187	188	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	453	first strand
Strand 2	B	431	439	anti-parallel
Strand 3	B	248	251	anti-parallel
Strand 4	B	508	509	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	453	first strand
Strand 2	B	431	439	anti-parallel
Strand 3	B	499	502	anti-parallel
Strand 4	B	486	494	anti-parallel
Strand 5	B	474	481	anti-parallel
Strand 6	B	516	523	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	295	first strand
Strand 2	B	299	305	anti-parallel
Strand 3	B	287	290	anti-parallel
Strand 4	B	388	396	anti-parallel
Strand 5	B	331	339	anti-parallel
Strand 6	B	352	360	anti-parallel
Strand 7	B	372	377	anti-parallel
Strand 8	B	366	367	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	295	first strand
Strand 2	B	299	305	anti-parallel
Strand 3	B	372	377	anti-parallel
Strand 4	B	366	367	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	446	first strand
Strand 2	A	351	360	anti-parallel
Strand 3	A	331	339	anti-parallel
Strand 4	A	388	396	anti-parallel
Strand 5	A	287	290	anti-parallel
Strand 6	A	303	305	anti-parallel
Strand 7	A	372	373	anti-parallel
Strand 8	A	366	367	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	66	first strand
Strand 2	A	198	212	anti-parallel
Strand 3	A	98	108	anti-parallel
Strand 4	A	154	158	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	66	first strand
Strand 2	A	198	212	anti-parallel
Strand 3	A	98	108	anti-parallel
Strand 4	A	167	168	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	80	first strand
Strand 2	A	177	182	anti-parallel
Strand 3	A	118	124	anti-parallel
Strand 4	A	143	147	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	453	first strand
Strand 2	A	431	439	anti-parallel
Strand 3	A	248	251	anti-parallel
Strand 4	A	508	509	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	453	first strand
Strand 2	A	431	439	anti-parallel
Strand 3	A	499	502	anti-parallel
Strand 4	A	487	494	anti-parallel
Strand 5	A	474	480	anti-parallel
Strand 6	A	516	523	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	266	first strand
Strand 2	A	272	273	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	66	first strand
Strand 2	C	198	206	anti-parallel
Strand 3	C	103	110	anti-parallel
Strand 4	C	154	158	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	80	first strand
Strand 2	C	177	187	anti-parallel
Strand 3	C	116	124	anti-parallel
Strand 4	C	143	147	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	168	first strand
Strand 2	C	98	100	anti-parallel
Strand 3	C	211	212	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	251	first strand
Strand 2	C	432	439	anti-parallel
Strand 3	C	450	453	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	251	first strand
Strand 2	C	432	439	anti-parallel
Strand 3	C	499	501	anti-parallel
Strand 4	C	487	494	anti-parallel
Strand 5	C	474	480	anti-parallel
Strand 6	C	516	523	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	287	289	first strand
Strand 2	C	388	396	anti-parallel
Strand 3	C	331	339	anti-parallel
Strand 4	C	352	360	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	304	first strand
Strand 2	C	372	373	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OTF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OTF