Analysis of interatomic Contacts of Structural Units in PDB entry:
6OTJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OTJ entry

There are 2 chains in PDB entry 6OTJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 431
B
 HIS -3LYS 431
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 6OTJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 10Right-handed alpha
Helix 2
AA2
A
18 29Right-handed alpha
Helix 3
AA3
A
45 47Right-handed 310
Helix 4
AA4
A
48 61Right-handed alpha
Helix 5
AA5
A
72 76Right-handed 310
Helix 6
AA6
A
90 106Right-handed alpha
Helix 7
AA7
A
107 109Right-handed 310
Helix 8
AA8
A
122 127Right-handed alpha
Helix 9
AA9
A
130 138Right-handed alpha
Helix 10
AB1
A
139 142Right-handed 310
Helix 11
AB2
A
143 149Right-handed alpha
Helix 12
AB3
A
150 158Right-handed alpha
Helix 13
AB4
A
165 170Right-handed alpha
Helix 14
AB5
A
170 187Right-handed alpha
Helix 15
AB6
A
194 196Right-handed 310
Helix 16
AB7
A
197 213Right-handed alpha
Helix 17
AB8
A
248 258Right-handed alpha
Helix 18
AB9
A
260 272Right-handed alpha
Helix 19
AC1
A
275 289Right-handed alpha
Helix 20
AC2
A
294 309Right-handed alpha
Helix 21
AC3
A
309 323Right-handed alpha
Helix 22
AC4
A
332 343Right-handed alpha
Helix 23
AC5
A
354 362Right-handed alpha
Helix 24
AC6
A
367 377Right-handed alpha
Helix 25
AC7
A
406 413Right-handed 310
Helix 26
AC8
B
2 10Right-handed alpha
Helix 27
AC9
B
18 29Right-handed alpha
Helix 28
AD1
B
45 47Right-handed 310
Helix 29
AD2
B
48 61Right-handed alpha
Helix 30
AD3
B
72 76Right-handed 310
Helix 31
AD4
B
90 106Right-handed alpha
Helix 32
AD5
B
107 109Right-handed 310
Helix 33
AD6
B
122 127Right-handed alpha
Helix 34
AD7
B
130 138Right-handed alpha
Helix 35
AD8
B
139 142Right-handed 310
Helix 36
AD9
B
143 150Right-handed alpha
Helix 37
AE1
B
150 158Right-handed alpha
Helix 38
AE2
B
165 170Right-handed alpha
Helix 39
AE3
B
170 187Right-handed alpha
Helix 40
AE4
B
194 196Right-handed 310
Helix 41
AE5
B
197 213Right-handed alpha
Helix 42
AE6
B
248 258Right-handed alpha
Helix 43
AE7
B
263 272Right-handed alpha
Helix 44
AE8
B
275 289Right-handed alpha
Helix 45
AE9
B
294 309Right-handed alpha
Helix 46
AF1
B
309 323Right-handed alpha
Helix 47
AF2
B
332 343Right-handed alpha
Helix 48
AF3
B
354 362Right-handed alpha
Helix 49
AF4
B
367 377Right-handed alpha
Helix 50
AF5
B
406 413Right-handed 310
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There are 4 sheets in PDB entry 6OTJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
217 220anti-parallel
Strand 3
A
188 193parallel
Strand 4
A
32 37parallel
Strand 5
A
64 69parallel
Strand 6
A
118 121parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 349first strand
Strand 2
A
425 430parallel
Strand 3
A
415 420anti-parallel
Strand 4
A
380 382anti-parallel
Strand 5
A
385 386anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 16first strand
Strand 2
B
217 220anti-parallel
Strand 3
B
188 193parallel
Strand 4
B
32 37parallel
Strand 5
B
64 69parallel
Strand 6
B
118 121parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
346 349first strand
Strand 2
B
425 430parallel
Strand 3
B
415 420anti-parallel
Strand 4
B
380 382anti-parallel
Strand 5
B
385 386anti-parallel
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