Analysis of interatomic Contacts of Structural Units in PDB entry:
6OTV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OTV entry

There are 2 chains in PDB entry 6OTV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 7PRO 356
B
 MET 7PRO 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6OTV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 30Right-handed 310
Helix 2
AA2
A
33 46Right-handed alpha
Helix 3
AA3
A
60 63Right-handed 310
Helix 4
AA4
A
99 113Right-handed alpha
Helix 5
AA5
A
143 146Right-handed 310
Helix 6
AA6
A
210 213Right-handed 310
Helix 7
AA7
A
219 226Right-handed alpha
Helix 8
AA8
A
226 244Right-handed alpha
Helix 9
AA9
A
248 252Right-handed 310
Helix 10
AB1
A
284 297Right-handed alpha
Helix 11
AB2
A
300 305Right-handed 310
Helix 12
AB3
A
333 337Right-handed 310
Helix 13
AB4
B
28 30Right-handed 310
Helix 14
AB5
B
33 46Right-handed alpha
Helix 15
AB6
B
60 63Right-handed 310
Helix 16
AB7
B
99 113Right-handed alpha
Helix 17
AB8
B
143 146Right-handed 310
Helix 18
AB9
B
210 213Right-handed 310
Helix 19
AC1
B
219 226Right-handed alpha
Helix 20
AC2
B
226 244Right-handed alpha
Helix 21
AC3
B
248 252Right-handed 310
Helix 22
AC4
B
284 297Right-handed alpha
Helix 23
AC5
B
300 305Right-handed 310
Helix 24
AC6
B
333 337Right-handed 310
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There are 4 sheets in PDB entry 6OTV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
79 86anti-parallel
Strand 3
A
65 71anti-parallel
Strand 4
A
20 26parallel
Strand 5
A
9 17anti-parallel
Strand 6
A
338 354anti-parallel
Strand 7
A
321 328anti-parallel
Strand 8
A
312 318anti-parallel
Strand 9
A
269 273parallel
Strand 10
A
256 261anti-parallel
Strand 11
A
203 208parallel
Strand 12
A
193 199anti-parallel
Strand 13
A
188 190anti-parallel
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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
79 86anti-parallel
Strand 3
A
122 129parallel
Strand 4
A
135 141anti-parallel
Strand 5
A
164 169anti-parallel
Strand 6
A
338 354anti-parallel
Strand 7
A
321 328anti-parallel
Strand 8
A
312 318anti-parallel
Strand 9
A
269 273parallel
Strand 10
A
256 261anti-parallel
Strand 11
A
203 208parallel
Strand 12
A
193 199anti-parallel
Strand 13
A
188 190anti-parallel
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There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 94first strand
Strand 2
B
79 86anti-parallel
Strand 3
B
65 71anti-parallel
Strand 4
B
20 26parallel
Strand 5
B
9 17anti-parallel
Strand 6
B
338 354anti-parallel
Strand 7
B
321 328anti-parallel
Strand 8
B
312 318anti-parallel
Strand 9
B
269 273parallel
Strand 10
B
256 261anti-parallel
Strand 11
B
203 208parallel
Strand 12
B
193 199anti-parallel
Strand 13
B
188 190anti-parallel
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There are 13 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 94first strand
Strand 2
B
79 86anti-parallel
Strand 3
B
122 129parallel
Strand 4
B
134 141anti-parallel
Strand 5
B
164 169anti-parallel
Strand 6
B
338 354anti-parallel
Strand 7
B
321 328anti-parallel
Strand 8
B
312 318anti-parallel
Strand 9
B
269 273parallel
Strand 10
B
256 261anti-parallel
Strand 11
B
203 208parallel
Strand 12
B
193 199anti-parallel
Strand 13
B
188 190anti-parallel
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