Analysis of interatomic Contacts of Structural Units in PDB entry:
6OUT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OUT entry

There are 3 chains in PDB entry 6OUT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 29	SER 520
B	THR 9	ALA 519
C	ASP 29	ALA 519

There are 30 helices in PDB entry 6OUT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	86	89	Right-handed 310
Helix 2	AA2	A	90	97	Right-handed alpha
Helix 3	AA3	A	98	100	Right-handed 310
Helix 4	AA4	A	138	143	Right-handed alpha
Helix 5	AA5	A	225	229	Right-handed 310
Helix 6	AA6	A	237	241	Right-handed 310
Helix 7	AA7	A	283	287	Right-handed 310
Helix 8	AA8	A	438	448	Right-handed alpha
Helix 9	AA9	A	491	495	Right-handed 310
Helix 10	AB1	B	38	42	Right-handed 310
Helix 11	AB2	B	53	58	Right-handed alpha
Helix 12	AB3	B	86	89	Right-handed 310
Helix 13	AB4	B	90	97	Right-handed alpha
Helix 14	AB5	B	98	100	Right-handed 310
Helix 15	AB6	B	140	145	Right-handed 310
Helix 16	AB7	B	225	229	Right-handed 310
Helix 17	AB8	B	237	241	Right-handed 310
Helix 18	AB9	B	283	287	Right-handed 310
Helix 19	AC1	B	438	448	Right-handed alpha
Helix 20	AC2	B	491	495	Right-handed 310
Helix 21	AC3	C	38	43	Right-handed 310
Helix 22	AC4	C	86	89	Right-handed 310
Helix 23	AC5	C	90	97	Right-handed alpha
Helix 24	AC6	C	98	100	Right-handed 310
Helix 25	AC7	C	138	143	Right-handed alpha
Helix 26	AC8	C	225	229	Right-handed 310
Helix 27	AC9	C	237	241	Right-handed 310
Helix 28	AD1	C	283	287	Right-handed 310
Helix 29	AD2	C	438	448	Right-handed alpha
Helix 30	AD3	C	491	495	Right-handed 310

There are 19 sheets in PDB entry 6OUT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	70	first strand
Strand 2	A	202	210	anti-parallel
Strand 3	A	107	114	anti-parallel
Strand 4	A	158	162	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	84	first strand
Strand 2	A	181	186	anti-parallel
Strand 3	A	122	128	anti-parallel
Strand 4	A	147	151	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	172	first strand
Strand 2	A	102	104	anti-parallel
Strand 3	A	215	216	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	A	191	192	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	255	first strand
Strand 2	A	417	425	anti-parallel
Strand 3	A	431	435	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	255	first strand
Strand 2	A	417	425	anti-parallel
Strand 3	A	480	483	anti-parallel
Strand 4	A	469	476	anti-parallel
Strand 5	A	456	462	anti-parallel
Strand 6	A	500	507	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	344	first strand
Strand 2	A	327	333	anti-parallel
Strand 3	A	367	377	anti-parallel
Strand 4	A	289	294	anti-parallel
Strand 5	A	298	301	anti-parallel
Strand 6	A	358	360	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	C	147	151	parallel
Strand 3	C	119	128	anti-parallel
Strand 4	C	181	192	anti-parallel
Strand 5	C	79	84	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	70	first strand
Strand 2	B	202	210	anti-parallel
Strand 3	B	107	112	anti-parallel
Strand 4	B	158	162	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	84	first strand
Strand 2	B	181	192	anti-parallel
Strand 3	B	119	128	anti-parallel
Strand 4	B	147	151	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	215	216	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	417	425	anti-parallel
Strand 3	B	431	435	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	417	425	anti-parallel
Strand 3	B	480	483	anti-parallel
Strand 4	B	469	476	anti-parallel
Strand 5	B	456	462	anti-parallel
Strand 6	B	500	507	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	344	first strand
Strand 2	B	329	333	anti-parallel
Strand 3	B	367	375	anti-parallel
Strand 4	B	289	294	anti-parallel
Strand 5	B	298	301	anti-parallel
Strand 6	B	358	360	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	70	first strand
Strand 2	C	202	210	anti-parallel
Strand 3	C	107	114	anti-parallel
Strand 4	C	158	162	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	172	first strand
Strand 2	C	102	104	anti-parallel
Strand 3	C	215	216	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	254	first strand
Strand 2	C	417	425	anti-parallel
Strand 3	C	431	435	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	254	first strand
Strand 2	C	417	425	anti-parallel
Strand 3	C	480	483	anti-parallel
Strand 4	C	469	476	anti-parallel
Strand 5	C	456	462	anti-parallel
Strand 6	C	500	507	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	343	first strand
Strand 2	C	329	333	anti-parallel
Strand 3	C	367	375	anti-parallel
Strand 4	C	289	294	anti-parallel
Strand 5	C	298	301	anti-parallel
Strand 6	C	358	360	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OUT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OUT