Analysis of interatomic Contacts of Structural Units in PDB entry:
6OVB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OVB entry

There is 1 chain in PDB entry 6OVB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 28ALA 593
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 6OVB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 48Right-handed alpha
Helix 2
AA2
A
52 63Right-handed alpha
Helix 3
AA3
A
68 84Right-handed alpha
Helix 4
AA4
A
88 119Right-handed alpha
Helix 5
AA5
A
122 144Right-handed alpha
Helix 6
AA6
A
145 148Right-handed 310
Helix 7
AA7
A
156 182Right-handed alpha
Helix 8
AA8
A
184 217Right-handed alpha
Helix 9
AA9
A
221 239Right-handed alpha
Helix 10
AB1
A
239 244Right-handed alpha
Helix 11
AB2
A
245 250Right-handed 310
Helix 12
AB3
A
279 283Right-handed 310
Helix 13
AB4
A
285 294Right-handed alpha
Helix 14
AB5
A
370 372Right-handed 310
Helix 15
AB6
A
402 406Right-handed alpha
Helix 16
AB7
A
414 419Right-handed alpha
Helix 17
AB8
A
466 468Right-handed 310
Helix 18
AB9
A
551 555Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 6OVB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
460 464parallel
Strand 3
A
581 590anti-parallel
Strand 4
A
488 491anti-parallel
Strand 5
A
475 478anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
460 464parallel
Strand 3
A
581 590anti-parallel
Strand 4
A
510 520anti-parallel
Strand 5
A
556 566anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 267first strand
Strand 2
A
436 446anti-parallel
Strand 3
A
377 378parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 267first strand
Strand 2
A
436 446anti-parallel
Strand 3
A
421 431anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 337first strand
Strand 2
A
316 328anti-parallel
Strand 3
A
341 342anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 337first strand
Strand 2
A
316 328anti-parallel
Strand 3
A
301 313anti-parallel
Strand 4
A
348 354anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 394first strand
Strand 2
A
380 387anti-parallel
Strand 3
A
361 368anti-parallel
Strand 4
A
400 401anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 455first strand
Strand 2
A
500 504parallel
Strand 3
A
570 577anti-parallel
Strand 4
A
495 496anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 455first strand
Strand 2
A
500 504parallel
Strand 3
A
570 577anti-parallel
Strand 4
A
524 529anti-parallel
Strand 5
A
536 540anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il