Analysis of interatomic Contacts of Structural Units in PDB entry:
6OVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OVF entry

There are 4 chains in PDB entry 6OVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 31GLU 184
B
 GLY 31GLU 184
C
 ASN 101GLN 111
D
 GLN 100GLN 111
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6OVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 44Right-handed alpha
Helix 2
AA2
A
65 86Right-handed alpha
Helix 3
AA3
A
117 119Right-handed 310
Helix 4
AA4
A
155 184Right-handed alpha
Helix 5
AA5
B
35 44Right-handed alpha
Helix 6
AA6
B
65 86Right-handed alpha
Helix 7
AA7
B
117 119Right-handed 310
Helix 8
AA8
B
155 182Right-handed alpha
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There are 2 sheets in PDB entry 6OVF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 116first strand
Strand 2
A
101 106anti-parallel
Strand 3
A
91 98anti-parallel
Strand 4
A
48 59anti-parallel
Strand 5
A
145 151anti-parallel
Strand 6
A
133 138anti-parallel
Strand 7
A
121 126anti-parallel
Strand 8
C
103 104anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 116first strand
Strand 2
B
101 106anti-parallel
Strand 3
B
91 98anti-parallel
Strand 4
B
48 59anti-parallel
Strand 5
B
145 151anti-parallel
Strand 6
B
133 138anti-parallel
Strand 7
B
121 126anti-parallel
Strand 8
D
103 104anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il