Analysis of interatomic Contacts of Structural Units in PDB entry:
6OVK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OVK entry

There are 2 chains in PDB entry 6OVK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	ASP 111	MET 323
B	SER 48	GLY 128

There are 7 helices in PDB entry 6OVK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	245	249	Right-handed 310
Helix 2	AA2	R	259	268	Right-handed alpha
Helix 3	AA3	R	278	281	Right-handed 310
Helix 4	AA4	R	293	305	Right-handed alpha
Helix 5	AA5	B	60	72	Right-handed alpha
Helix 6	AA6	B	79	83	Right-handed alpha
Helix 7	AA7	B	96	104	Right-handed alpha

There are 7 sheets in PDB entry 6OVK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	112	117	first strand
Strand 2	R	141	146	anti-parallel
Strand 3	R	151	157	anti-parallel
Strand 4	R	173	177	parallel
Strand 5	R	180	193	anti-parallel
Strand 6	R	198	211	anti-parallel
Strand 7	R	219	222	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	124	127	first strand
Strand 2	R	133	136	anti-parallel
Strand 3	R	159	163	anti-parallel
Strand 4	R	180	193	anti-parallel
Strand 5	R	198	211	anti-parallel
Strand 6	R	225	229	anti-parallel
Strand 7	R	234	239	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	251	258	first strand
Strand 2	R	284	290	anti-parallel
Strand 3	B	75	78	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	273	276	first strand
Strand 2	R	316	321	parallel
Strand 3	R	307	313	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	55	first strand
Strand 2	B	90	95	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	86	87	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	113	first strand
Strand 2	B	119	123	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OVK

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OVK