Analysis of interatomic Contacts of Structural Units in PDB entry:
6OVO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OVO entry

There are 2 chains in PDB entry 6OVO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1SER 216
B
 GLU 3GLY 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6OVO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
95 99Right-handed 310
Helix 2
AA2
A
110 114Right-handed 310
Helix 3
AA3
A
179 182Right-handed 310
Helix 4
AA4
A
198 202Right-handed 310
Helix 5
AA5
B
95 99Right-handed 310
Helix 6
AA6
B
131 135Right-handed 310
Helix 7
AA7
B
146 154Right-handed alpha
Helix 8
AA8
B
213 218Right-handed alpha
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There are 11 sheets in PDB entry 6OVO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
86 91anti-parallel
Strand 4
A
76 81anti-parallel
Strand 5
A
65 68anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
120 125parallel
Strand 3
A
100 106anti-parallel
Strand 4
A
39 44anti-parallel
Strand 5
A
51 56anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
120 125parallel
Strand 3
A
100 106anti-parallel
Strand 4
A
115 116anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
147 152anti-parallel
Strand 3
A
183 192anti-parallel
Strand 4
A
169 170anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
147 152anti-parallel
Strand 3
A
183 192anti-parallel
Strand 4
A
174 178anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
86 92anti-parallel
Strand 4
B
76 83anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
124 128parallel
Strand 3
B
100 107anti-parallel
Strand 4
B
38 44anti-parallel
Strand 5
B
51 57anti-parallel
Strand 6
B
64 68anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
124 128parallel
Strand 3
B
100 107anti-parallel
Strand 4
B
118 120anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 143first strand
Strand 2
B
155 165anti-parallel
Strand 3
B
203 212anti-parallel
Strand 4
B
185 187anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 143first strand
Strand 2
B
155 165anti-parallel
Strand 3
B
203 212anti-parallel
Strand 4
B
192 193anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 181first strand
Strand 2
B
170 176anti-parallel
Strand 3
B
222 229anti-parallel
Strand 4
B
248 255anti-parallel
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