Analysis of interatomic Contacts of Structural Units in PDB entry:
6OVT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OVT entry

There are 8 chains in PDB entry 6OVT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 14	ASP 138
A	SER 140	GLY 575
B	ALA 15	ASP 138
B	SER 140	GLY 575
C	VAL 14	ASP 138
C	SER 140	GLY 575
D	VAL 14	ASP 138
D	SER 140	GLY 575

There are113 helices in PDB entry 6OVT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	26	Right-handed alpha
Helix 2	AA2	A	27	29	Right-handed 310
Helix 3	AA3	A	30	39	Right-handed alpha
Helix 4	AA4	A	43	47	Right-handed 310
Helix 5	AA5	A	62	66	Right-handed 310
Helix 6	AA6	A	67	82	Right-handed alpha
Helix 7	AA7	A	95	100	Right-handed alpha
Helix 8	AA8	A	102	106	Right-handed 310
Helix 9	AA9	A	107	127	Right-handed alpha
Helix 10	AB1	A	139	152	Right-handed alpha
Helix 11	AB2	A	180	192	Right-handed alpha
Helix 12	AB3	A	196	207	Right-handed alpha
Helix 13	AB4	A	218	230	Right-handed alpha
Helix 14	AB5	A	245	264	Right-handed alpha
Helix 15	AB6	A	267	272	Right-handed alpha
Helix 16	AB7	A	273	288	Right-handed alpha
Helix 17	AB8	A	291	304	Right-handed alpha
Helix 18	AB9	A	309	319	Right-handed alpha
Helix 19	AC1	A	333	340	Right-handed alpha
Helix 20	AC2	A	342	353	Right-handed alpha
Helix 21	AC3	A	367	376	Right-handed alpha
Helix 22	AC4	A	414	417	Right-handed 310
Helix 23	AC5	A	431	441	Right-handed alpha
Helix 24	AC6	A	466	476	Right-handed alpha
Helix 25	AC7	A	505	509	Right-handed 310
Helix 26	AC8	A	510	515	Right-handed 310
Helix 27	AC9	A	535	541	Right-handed alpha
Helix 28	AD1	A	556	565	Right-handed alpha
Helix 29	AD2	A	567	571	Right-handed 310
Helix 30	AD3	B	21	26	Right-handed alpha
Helix 31	AD4	B	27	29	Right-handed 310
Helix 32	AD5	B	30	39	Right-handed alpha
Helix 33	AD6	B	43	47	Right-handed 310
Helix 34	AD7	B	62	66	Right-handed 310
Helix 35	AD8	B	67	82	Right-handed alpha
Helix 36	AD9	B	102	106	Right-handed 310
Helix 37	AE1	B	107	127	Right-handed alpha
Helix 38	AE2	B	139	152	Right-handed alpha
Helix 39	AE3	B	179	192	Right-handed alpha
Helix 40	AE4	B	196	207	Right-handed alpha
Helix 41	AE5	B	218	230	Right-handed alpha
Helix 42	AE6	B	245	264	Right-handed alpha
Helix 43	AE7	B	267	272	Right-handed alpha
Helix 44	AE8	B	273	287	Right-handed alpha
Helix 45	AE9	B	291	304	Right-handed alpha
Helix 46	AF1	B	309	319	Right-handed alpha
Helix 47	AF2	B	333	340	Right-handed alpha
Helix 48	AF3	B	342	353	Right-handed alpha
Helix 49	AF4	B	367	376	Right-handed alpha
Helix 50	AF5	B	431	441	Right-handed alpha
Helix 51	AF6	B	467	476	Right-handed alpha
Helix 52	AF7	B	505	509	Right-handed 310
Helix 53	AF8	B	510	515	Right-handed alpha
Helix 54	AF9	B	535	541	Right-handed alpha
Helix 55	AG1	B	542	546	Right-handed 310
Helix 56	AG2	B	555	565	Right-handed alpha
Helix 57	AG3	B	567	571	Right-handed 310
Helix 58	AG4	C	21	26	Right-handed alpha
Helix 59	AG5	C	27	29	Right-handed 310
Helix 60	AG6	C	30	39	Right-handed alpha
Helix 61	AG7	C	43	49	Right-handed 310
Helix 62	AG8	C	62	66	Right-handed 310
Helix 63	AG9	C	67	82	Right-handed alpha
Helix 64	AH1	C	102	106	Right-handed 310
Helix 65	AH2	C	107	127	Right-handed alpha
Helix 66	AH3	C	139	152	Right-handed alpha
Helix 67	AH4	C	179	192	Right-handed alpha
Helix 68	AH5	C	196	207	Right-handed alpha
Helix 69	AH6	C	218	230	Right-handed alpha
Helix 70	AH7	C	245	265	Right-handed alpha
Helix 71	AH8	C	267	272	Right-handed alpha
Helix 72	AH9	C	273	287	Right-handed alpha
Helix 73	AI1	C	291	304	Right-handed alpha
Helix 74	AI2	C	309	319	Right-handed alpha
Helix 75	AI3	C	333	340	Right-handed alpha
Helix 76	AI4	C	342	353	Right-handed alpha
Helix 77	AI5	C	367	376	Right-handed alpha
Helix 78	AI6	C	431	441	Right-handed alpha
Helix 79	AI7	C	467	476	Right-handed alpha
Helix 80	AI8	C	505	509	Right-handed 310
Helix 81	AI9	C	510	514	Right-handed 310
Helix 82	AJ1	C	535	541	Right-handed alpha
Helix 83	AJ2	C	542	546	Right-handed 310
Helix 84	AJ3	C	555	565	Right-handed alpha
Helix 85	AJ4	C	567	571	Right-handed 310
Helix 86	AJ5	D	21	26	Right-handed alpha
Helix 87	AJ6	D	27	29	Right-handed 310
Helix 88	AJ7	D	30	39	Right-handed alpha
Helix 89	AJ8	D	43	47	Right-handed 310
Helix 90	AJ9	D	62	66	Right-handed 310
Helix 91	AK1	D	67	82	Right-handed alpha
Helix 92	AK2	D	102	106	Right-handed 310
Helix 93	AK3	D	107	127	Right-handed alpha
Helix 94	AK4	D	139	152	Right-handed alpha
Helix 95	AK5	D	179	192	Right-handed alpha
Helix 96	AK6	D	196	207	Right-handed alpha
Helix 97	AK7	D	218	230	Right-handed alpha
Helix 98	AK8	D	245	265	Right-handed alpha
Helix 99	AK9	D	267	272	Right-handed alpha
Helix 100	AL1	D	273	288	Right-handed alpha
Helix 101	AL2	D	291	304	Right-handed alpha
Helix 102	AL3	D	309	319	Right-handed alpha
Helix 103	AL4	D	333	341	Right-handed alpha
Helix 104	AL5	D	342	353	Right-handed alpha
Helix 105	AL6	D	367	376	Right-handed alpha
Helix 106	AL7	D	431	441	Right-handed alpha
Helix 107	AL8	D	467	476	Right-handed alpha
Helix 108	AL9	D	505	509	Right-handed 310
Helix 109	AM1	D	510	515	Right-handed alpha
Helix 110	AM2	D	535	542	Right-handed alpha
Helix 111	AM3	D	543	546	Right-handed 310
Helix 112	AM4	D	555	565	Right-handed alpha
Helix 113	AM5	D	567	571	Right-handed 310

There are 15 sheets in PDB entry 6OVT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	90	first strand
Strand 2	A	51	56	parallel
Strand 3	A	130	135	parallel
Strand 4	A	154	159	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	169	first strand
Strand 2	A	175	178	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	401	first strand
Strand 2	A	410	412	anti-parallel
Strand 3	A	498	500	anti-parallel
Strand 4	A	483	486	parallel
Strand 5	A	448	453	parallel
Strand 6	A	421	430	parallel
Strand 7	A	520	524	anti-parallel
Strand 8	A	529	532	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	90	first strand
Strand 2	B	51	56	parallel
Strand 3	B	130	135	parallel
Strand 4	B	154	159	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	169	first strand
Strand 2	B	175	178	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	401	first strand
Strand 2	B	409	413	anti-parallel
Strand 3	B	498	503	anti-parallel
Strand 4	B	483	486	parallel
Strand 5	B	448	453	parallel
Strand 6	B	421	430	parallel
Strand 7	B	520	524	anti-parallel
Strand 8	B	529	532	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	465	466	first strand
Strand 2	B	489	490	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	90	first strand
Strand 2	C	51	56	parallel
Strand 3	C	130	135	parallel
Strand 4	C	154	159	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	169	first strand
Strand 2	C	175	178	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	401	first strand
Strand 2	C	410	413	anti-parallel
Strand 3	C	497	500	anti-parallel
Strand 4	C	483	486	parallel
Strand 5	C	448	453	parallel
Strand 6	C	421	430	parallel
Strand 7	C	520	524	anti-parallel
Strand 8	C	529	532	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	465	466	first strand
Strand 2	C	489	490	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	90	first strand
Strand 2	D	51	56	parallel
Strand 3	D	130	135	parallel
Strand 4	D	154	159	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	169	first strand
Strand 2	D	175	178	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	398	403	first strand
Strand 2	D	406	413	anti-parallel
Strand 3	D	498	503	anti-parallel
Strand 4	D	483	486	parallel
Strand 5	D	448	453	parallel
Strand 6	D	422	430	parallel
Strand 7	D	520	524	anti-parallel
Strand 8	D	529	533	anti-parallel
Strand 9	D	398	403	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	465	466	first strand
Strand 2	D	489	490	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OVT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OVT