Analysis of interatomic Contacts of Structural Units in PDB entry:
6OX6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OX6 entry

There are 2 chains in PDB entry 6OX6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 243GLY 436
B
 ALA 2GLY 77
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6OX6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
248 254Right-handed alpha
Helix 2
AA2
A
255 274Right-handed alpha
Helix 3
AA3
A
285 297Right-handed alpha
Helix 4
AA4
A
300 304Right-handed 310
Helix 5
AA5
A
315 317Right-handed 310
Helix 6
AA6
A
318 329Right-handed alpha
Helix 7
AA7
A
366 374Right-handed alpha
Helix 8
AA8
A
375 384Right-handed alpha
Helix 9
AA9
A
384 394Right-handed alpha
Helix 10
AB1
A
401 411Right-handed alpha
Helix 11
AB2
A
418 436Right-handed alpha
Helix 12
AB3
B
6 12Right-handed alpha
Helix 13
AB4
B
19 21Right-handed 310
Helix 14
AB5
B
52 62Right-handed alpha
Helix 15
AB6
B
66 73Right-handed alpha
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There are 2 sheets in PDB entry 6OX6. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 280first strand
Strand 2
A
308 313anti-parallel
Strand 3
A
359 365parallel
Strand 4
A
347 353anti-parallel
Strand 5
A
332 336anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 38first strand
Strand 2
B
23 28anti-parallel
Strand 3
B
14 18anti-parallel
Strand 4
B
63 65anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il