Analysis of interatomic Contacts of Structural Units in PDB entry:
6OXB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OXB entry

There are 6 chains in PDB entry 6OXB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 943	VAL 1100
A	LEU 943	VAL 1100
C	LEU 943	PHE 1101
D	LEU 943	SER 1099
E	HIS 944	VAL 1100
F	LEU 943	VAL 1100

There are 18 helices in PDB entry 6OXB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	1000	1004	Right-handed 310
Helix 2	AA2	B	1040	1044	Right-handed alpha
Helix 3	AA3	B	1052	1054	Right-handed 310
Helix 4	AA4	A	1000	1004	Right-handed 310
Helix 5	AA5	A	1040	1044	Right-handed alpha
Helix 6	AA6	A	1052	1054	Right-handed 310
Helix 7	AA7	C	1000	1004	Right-handed 310
Helix 8	AA8	C	1040	1044	Right-handed alpha
Helix 9	AA9	C	1052	1054	Right-handed 310
Helix 10	AB1	D	1000	1004	Right-handed 310
Helix 11	AB2	D	1040	1044	Right-handed alpha
Helix 12	AB3	D	1052	1054	Right-handed 310
Helix 13	AB4	E	1000	1004	Right-handed 310
Helix 14	AB5	E	1040	1044	Right-handed alpha
Helix 15	AB6	E	1052	1054	Right-handed 310
Helix 16	AB7	F	1000	1004	Right-handed 310
Helix 17	AB8	F	1040	1044	Right-handed alpha
Helix 18	AB9	F	1052	1054	Right-handed 310

There are 30 sheets in PDB entry 6OXB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	945	948	first strand
Strand 2	B	982	986	anti-parallel
Strand 3	B	991	999	anti-parallel
Strand 4	B	976	979	anti-parallel
Strand 5	B	963	966	anti-parallel
Strand 6	B	1031	1039	anti-parallel
Strand 7	B	1056	1064	parallel
Strand 8	B	1069	1072	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	945	948	first strand
Strand 2	B	982	986	anti-parallel
Strand 3	B	991	999	anti-parallel
Strand 4	B	1016	1027	anti-parallel
Strand 5	B	1056	1064	parallel
Strand 6	B	1069	1072	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	950	953	first strand
Strand 2	B	956	959	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1011	1013	first strand
Strand 2	B	1096	1098	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1046	1048	first strand
Strand 2	B	1085	1087	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	945	948	first strand
Strand 2	A	976	986	anti-parallel
Strand 3	A	963	966	anti-parallel
Strand 4	A	1031	1039	anti-parallel
Strand 5	A	1056	1064	parallel
Strand 6	A	1069	1072	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	945	948	first strand
Strand 2	A	976	986	anti-parallel
Strand 3	A	991	999	anti-parallel
Strand 4	A	1016	1027	anti-parallel
Strand 5	A	1056	1064	parallel
Strand 6	A	1069	1072	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	950	953	first strand
Strand 2	A	956	959	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1012	1013	first strand
Strand 2	A	1096	1097	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1046	1048	first strand
Strand 2	A	1085	1087	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	946	948	first strand
Strand 2	C	982	985	anti-parallel
Strand 3	C	991	999	anti-parallel
Strand 4	C	976	979	anti-parallel
Strand 5	C	963	966	anti-parallel
Strand 6	C	1031	1039	anti-parallel
Strand 7	C	1056	1064	parallel
Strand 8	C	1069	1072	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	946	948	first strand
Strand 2	C	982	985	anti-parallel
Strand 3	C	991	999	anti-parallel
Strand 4	C	1016	1027	anti-parallel
Strand 5	C	1056	1064	parallel
Strand 6	C	1069	1072	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	950	953	first strand
Strand 2	C	956	959	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1012	1013	first strand
Strand 2	C	1096	1097	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1046	1048	first strand
Strand 2	C	1085	1087	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	946	948	first strand
Strand 2	D	976	985	anti-parallel
Strand 3	D	963	966	anti-parallel
Strand 4	D	1031	1039	anti-parallel
Strand 5	D	1056	1064	parallel
Strand 6	D	1069	1072	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	946	948	first strand
Strand 2	D	976	985	anti-parallel
Strand 3	D	991	999	anti-parallel
Strand 4	D	1016	1027	anti-parallel
Strand 5	D	1056	1064	parallel
Strand 6	D	1069	1072	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	950	953	first strand
Strand 2	D	956	959	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1011	1013	first strand
Strand 2	D	1096	1098	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1047	1048	first strand
Strand 2	D	1085	1086	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	946	948	first strand
Strand 2	E	982	985	anti-parallel
Strand 3	E	991	999	anti-parallel
Strand 4	E	976	979	anti-parallel
Strand 5	E	963	966	anti-parallel
Strand 6	E	1031	1039	anti-parallel
Strand 7	E	1056	1064	parallel
Strand 8	E	1069	1072	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	946	948	first strand
Strand 2	E	982	985	anti-parallel
Strand 3	E	991	999	anti-parallel
Strand 4	E	1016	1027	anti-parallel
Strand 5	E	1056	1064	parallel
Strand 6	E	1069	1072	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	950	953	first strand
Strand 2	E	956	959	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1011	1013	first strand
Strand 2	E	1096	1098	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1046	1048	first strand
Strand 2	E	1085	1087	anti-parallel

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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	946	948	first strand
Strand 2	F	982	985	anti-parallel
Strand 3	F	991	999	anti-parallel
Strand 4	F	976	979	anti-parallel
Strand 5	F	963	966	anti-parallel
Strand 6	F	1031	1039	anti-parallel
Strand 7	F	1056	1064	parallel
Strand 8	F	1069	1072	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	946	948	first strand
Strand 2	F	982	985	anti-parallel
Strand 3	F	991	999	anti-parallel
Strand 4	F	1016	1027	anti-parallel
Strand 5	F	1056	1064	parallel
Strand 6	F	1069	1072	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	950	953	first strand
Strand 2	F	956	959	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1012	1013	first strand
Strand 2	F	1096	1097	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1046	1048	first strand
Strand 2	F	1085	1087	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OXB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OXB