Analysis of interatomic Contacts of Structural Units in PDB entry:
6OXD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OXD entry

There are 2 chains in PDB entry 6OXD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 6LEU 749
B
 LEU 12ALA 616
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 6OXD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 41Right-handed alpha
Helix 2
AA2
A
44 49Right-handed 310
Helix 3
AA3
A
63 73Right-handed alpha
Helix 4
AA4
A
93 97Right-handed 310
Helix 5
AA5
A
110 124Right-handed alpha
Helix 6
AA6
A
134 139Right-handed alpha
Helix 7
AA7
A
145 149Right-handed 310
Helix 8
AA8
A
161 169Right-handed alpha
Helix 9
AA9
A
186 201Right-handed alpha
Helix 10
AB1
A
204 208Right-handed 310
Helix 11
AB2
A
215 222Right-handed alpha
Helix 12
AB3
A
229 248Right-handed alpha
Helix 13
AB4
A
258 265Right-handed alpha
Helix 14
AB5
A
267 289Right-handed alpha
Helix 15
AB6
A
292 297Right-handed alpha
Helix 16
AB7
A
309 330Right-handed alpha
Helix 17
AB8
A
335 340Right-handed 310
Helix 18
AB9
A
349 352Right-handed 310
Helix 19
AC1
A
358 374Right-handed alpha
Helix 20
AC2
A
392 409Right-handed alpha
Helix 21
AC3
A
422 446Right-handed alpha
Helix 22
AC4
A
448 455Right-handed alpha
Helix 23
AC5
A
456 475Right-handed alpha
Helix 24
AC6
A
500 519Right-handed alpha
Helix 25
AC7
A
520 537Right-handed alpha
Helix 26
AC8
A
549 560Right-handed alpha
Helix 27
AC9
A
563 576Right-handed alpha
Helix 28
AD1
A
587 593Right-handed alpha
Helix 29
AD2
A
596 613Right-handed alpha
Helix 30
AD3
A
630 644Right-handed alpha
Helix 31
AD4
A
655 667Right-handed alpha
Helix 32
AD5
A
679 694Right-handed alpha
Helix 33
AD6
A
708 710Right-handed 310
Helix 34
AD7
A
711 718Right-handed alpha
Helix 35
AD8
A
729 746Right-handed alpha
Helix 36
AD9
B
13 28Right-handed alpha
Helix 37
AE1
B
41 47Right-handed 310
Helix 38
AE2
B
61 65Right-handed 310
Helix 39
AE3
B
106 115Right-handed alpha
Helix 40
AE4
B
131 133Right-handed 310
Helix 41
AE5
B
134 139Right-handed alpha
Helix 42
AE6
B
143 147Right-handed 310
Helix 43
AE7
B
153 155Right-handed 310
Helix 44
AE8
B
156 170Right-handed alpha
Helix 45
AE9
B
171 176Right-handed 310
Helix 46
AF1
B
186 188Right-handed 310
Helix 47
AF2
B
189 194Right-handed alpha
Helix 48
AF3
B
199 211Right-handed alpha
Helix 49
AF4
B
223 228Right-handed alpha
Helix 50
AF5
B
232 254Right-handed alpha
Helix 51
AF6
B
257 263Right-handed alpha
Helix 52
AF7
B
274 296Right-handed alpha
Helix 53
AF8
B
298 303Right-handed 310
Helix 54
AF9
B
321 337Right-handed alpha
Helix 55
AG1
B
361 377Right-handed alpha
Helix 56
AG2
B
390 414Right-handed alpha
Helix 57
AG3
B
420 441Right-handed alpha
Helix 58
AG4
B
473 491Right-handed alpha
Helix 59
AG5
B
503 520Right-handed alpha
Helix 60
AG6
B
535 543Right-handed alpha
Helix 61
AG7
B
554 572Right-handed alpha
Helix 62
AG8
B
582 586Right-handed 310
Helix 63
AG9
B
602 614Right-handed alpha
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There are 6 sheets in PDB entry 6OXD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
57 58anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 252first strand
Strand 2
A
210 212parallel
Strand 3
A
179 181parallel
Strand 4
A
128 131parallel
Strand 5
A
101 106parallel
Strand 6
A
378 380parallel
Strand 7
A
343 347parallel
Strand 8
A
300 306parallel
Strand 9
A
254 257parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
646 649first strand
Strand 2
A
618 622parallel
Strand 3
A
670 675parallel
Strand 4
A
700 705parallel
Strand 5
A
720 724parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 49first strand
Strand 2
B
55 56anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 97first strand
Strand 2
B
120 124parallel
Strand 3
B
149 152parallel
Strand 4
B
181 185parallel
Strand 5
B
216 222parallel
Strand 6
B
265 271parallel
Strand 7
B
306 310parallel
Strand 8
B
341 343parallel
Strand 9
B
92 97parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
524 526first strand
Strand 2
B
495 500parallel
Strand 3
B
548 552parallel
Strand 4
B
576 580parallel
Strand 5
B
595 597parallel
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