Analysis of interatomic Contacts of Structural Units in PDB entry:
6OXL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OXL entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 7 chains in PDB entry 6OXL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 10	PRO 606
B	LYS 5	PHE 581
M	MET 1	VAL 155
M	GLY 157	CYS 435
S	MET 1	LEU 141
N	GLU 7	GLN 138
n	UNK 1	UNK 7

There are 97 helices in PDB entry 6OXL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	22	Right-handed alpha
Helix 2	AA2	A	26	45	Right-handed alpha
Helix 3	AA3	A	52	68	Right-handed alpha
Helix 4	AA4	A	75	84	Right-handed alpha
Helix 5	AA5	A	87	101	Right-handed alpha
Helix 6	AA6	A	105	121	Right-handed alpha
Helix 7	AA7	A	124	139	Right-handed alpha
Helix 8	AA8	A	140	148	Right-handed alpha
Helix 9	AA9	A	150	157	Right-handed alpha
Helix 10	AB1	A	161	179	Right-handed alpha
Helix 11	AB2	A	188	193	Right-handed alpha
Helix 12	AB3	A	194	198	Right-handed 310
Helix 13	AB4	A	201	218	Right-handed alpha
Helix 14	AB5	A	222	224	Right-handed 310
Helix 15	AB6	A	225	238	Right-handed alpha
Helix 16	AB7	A	256	264	Right-handed alpha
Helix 17	AB8	A	265	268	Right-handed 310
Helix 18	AB9	A	273	291	Right-handed alpha
Helix 19	AC1	A	299	304	Right-handed alpha
Helix 20	AC2	A	304	321	Right-handed alpha
Helix 21	AC3	A	323	335	Right-handed alpha
Helix 22	AC4	A	336	340	Right-handed 310
Helix 23	AC5	A	342	357	Right-handed alpha
Helix 24	AC6	A	362	367	Right-handed alpha
Helix 25	AC7	A	369	380	Right-handed alpha
Helix 26	AC8	A	382	397	Right-handed alpha
Helix 27	AC9	A	398	400	Right-handed 310
Helix 28	AD1	A	401	414	Right-handed alpha
Helix 29	AD2	A	420	435	Right-handed alpha
Helix 30	AD3	A	438	454	Right-handed alpha
Helix 31	AD4	A	458	472	Right-handed alpha
Helix 32	AD5	A	474	487	Right-handed alpha
Helix 33	AD6	A	493	507	Right-handed alpha
Helix 34	AD7	A	508	511	Right-handed 310
Helix 35	AD8	A	518	529	Right-handed alpha
Helix 36	AD9	A	534	552	Right-handed alpha
Helix 37	AE1	A	555	564	Right-handed alpha
Helix 38	AE2	A	573	589	Right-handed alpha
Helix 39	AE3	A	592	599	Right-handed alpha
Helix 40	AE4	B	13	23	Right-handed alpha
Helix 41	AE5	B	26	44	Right-handed alpha
Helix 42	AE6	B	47	49	Right-handed 310
Helix 43	AE7	B	50	55	Right-handed alpha
Helix 44	AE8	B	56	59	Right-handed 310
Helix 45	AE9	B	62	79	Right-handed alpha
Helix 46	AF1	B	80	85	Right-handed alpha
Helix 47	AF2	B	87	92	Right-handed alpha
Helix 48	AF3	B	100	113	Right-handed alpha
Helix 49	AF4	B	115	117	Right-handed 310
Helix 50	AF5	B	118	130	Right-handed alpha
Helix 51	AF6	B	136	151	Right-handed alpha
Helix 52	AF7	B	161	170	Right-handed alpha
Helix 53	AF8	B	175	187	Right-handed alpha
Helix 54	AF9	B	188	190	Right-handed 310
Helix 55	AG1	B	202	212	Right-handed alpha
Helix 56	AG2	B	217	222	Right-handed alpha
Helix 57	AG3	B	222	227	Right-handed alpha
Helix 58	AG4	B	235	245	Right-handed alpha
Helix 59	AG5	B	246	249	Right-handed 310
Helix 60	AG6	B	252	264	Right-handed alpha
Helix 61	AG7	B	276	280	Right-handed alpha
Helix 62	AG8	B	281	283	Right-handed 310
Helix 63	AG9	B	284	290	Right-handed alpha
Helix 64	AH1	B	295	313	Right-handed alpha
Helix 65	AH2	B	331	345	Right-handed alpha
Helix 66	AH3	B	350	363	Right-handed alpha
Helix 67	AH4	B	366	374	Right-handed alpha
Helix 68	AH5	B	374	382	Right-handed alpha
Helix 69	AH6	B	384	386	Right-handed 310
Helix 70	AH7	B	387	399	Right-handed alpha
Helix 71	AH8	B	400	402	Right-handed 310
Helix 72	AH9	B	406	421	Right-handed alpha
Helix 73	AI1	B	425	427	Right-handed 310
Helix 74	AI2	B	428	433	Right-handed alpha
Helix 75	AI3	B	434	436	Right-handed 310
Helix 76	AI4	B	441	454	Right-handed alpha
Helix 77	AI5	B	461	466	Right-handed alpha
Helix 78	AI6	B	477	495	Right-handed alpha
Helix 79	AI7	B	499	507	Right-handed alpha
Helix 80	AI8	B	516	531	Right-handed alpha
Helix 81	AI9	B	533	541	Right-handed alpha
Helix 82	AJ1	B	556	564	Right-handed alpha
Helix 83	AJ2	B	565	567	Right-handed 310
Helix 84	AJ3	B	569	574	Right-handed alpha
Helix 85	AJ4	B	577	581	Right-handed 310
Helix 86	AJ5	M	27	36	Right-handed alpha
Helix 87	AJ6	M	74	94	Right-handed alpha
Helix 88	AJ7	M	97	103	Right-handed alpha
Helix 89	AJ8	M	104	112	Right-handed alpha
Helix 90	AJ9	M	125	130	Right-handed alpha
Helix 91	AK1	S	24	36	Right-handed alpha
Helix 92	AK2	S	78	96	Right-handed alpha
Helix 93	AK3	S	99	104	Right-handed 310
Helix 94	AK4	S	106	117	Right-handed alpha
Helix 95	AK5	S	127	140	Right-handed alpha
Helix 96	AK6	N	31	35	Right-handed 310
Helix 97	AK7	N	112	138	Right-handed alpha

There are 11 sheets in PDB entry 6OXL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	249	first strand
Strand 2	A	252	253	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	14	17	first strand
Strand 2	M	5	8	anti-parallel
Strand 3	M	64	69	anti-parallel
Strand 4	M	54	59	anti-parallel
Strand 5	M	47	49	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	116	117	first strand
Strand 2	M	120	121	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	245	248	first strand
Strand 2	M	273	279	anti-parallel
Strand 3	M	191	204	anti-parallel
Strand 4	M	172	185	anti-parallel
Strand 5	M	425	433	parallel
Strand 6	M	386	392	anti-parallel
Strand 7	M	316	325	anti-parallel
Strand 8	M	350	359	anti-parallel
Strand 9	M	341	345	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	245	248	first strand
Strand 2	M	273	279	anti-parallel
Strand 3	M	191	204	anti-parallel
Strand 4	M	172	185	anti-parallel
Strand 5	M	419	422	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	262	265	first strand
Strand 2	M	211	216	anti-parallel
Strand 3	M	401	407	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	287	296	first strand
Strand 2	M	300	309	anti-parallel
Strand 3	M	363	372	anti-parallel
Strand 4	M	330	336	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	14	19	first strand
Strand 2	S	2	9	anti-parallel
Strand 3	S	65	71	anti-parallel
Strand 4	S	56	58	anti-parallel
Strand 5	S	49	50	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	14	19	first strand
Strand 2	S	2	9	anti-parallel
Strand 3	S	65	71	anti-parallel
Strand 4	S	61	62	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	118	119	first strand
Strand 2	S	122	123	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	67	72	first strand
Strand 2	N	54	60	anti-parallel
Strand 3	N	42	51	anti-parallel
Strand 4	N	8	19	anti-parallel
Strand 5	N	103	109	anti-parallel
Strand 6	N	91	95	anti-parallel
Strand 7	N	81	83	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OXL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OXL