Analysis of interatomic Contacts of Structural Units in PDB entry:
6OXM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OXM entry

There are 2 chains in PDB entry 6OXM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 411
B
 MET 1LYS 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6OXM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 11Right-handed 310
Helix 2
AA2
A
15 31Right-handed alpha
Helix 3
AA3
A
31 36Right-handed alpha
Helix 4
AA4
A
51 68Right-handed alpha
Helix 5
AA5
A
80 92Right-handed alpha
Helix 6
AA6
A
93 96Right-handed 310
Helix 7
AA7
A
100 102Right-handed 310
Helix 8
AA8
A
109 117Right-handed alpha
Helix 9
AA9
A
118 121Right-handed 310
Helix 10
AB1
A
135 144Right-handed alpha
Helix 11
AB2
A
196 210Right-handed alpha
Helix 12
AB3
A
220 224Right-handed 310
Helix 13
AB4
A
232 236Right-handed 310
Helix 14
AB5
A
238 241Right-handed 310
Helix 15
AB6
A
281 293Right-handed alpha
Helix 16
AB7
A
297 306Right-handed alpha
Helix 17
AB8
A
309 337Right-handed alpha
Helix 18
AB9
A
359 370Right-handed alpha
Helix 19
AC1
A
379 386Right-handed 310
Helix 20
AC2
A
396 410Right-handed alpha
Helix 21
AC3
B
5 11Right-handed 310
Helix 22
AC4
B
15 31Right-handed alpha
Helix 23
AC5
B
31 36Right-handed alpha
Helix 24
AC6
B
51 68Right-handed alpha
Helix 25
AC7
B
80 92Right-handed alpha
Helix 26
AC8
B
93 96Right-handed 310
Helix 27
AC9
B
100 102Right-handed 310
Helix 28
AD1
B
109 117Right-handed alpha
Helix 29
AD2
B
118 121Right-handed 310
Helix 30
AD3
B
135 144Right-handed alpha
Helix 31
AD4
B
196 210Right-handed alpha
Helix 32
AD5
B
220 224Right-handed 310
Helix 33
AD6
B
232 236Right-handed 310
Helix 34
AD7
B
238 241Right-handed 310
Helix 35
AD8
B
281 293Right-handed alpha
Helix 36
AD9
B
297 306Right-handed alpha
Helix 37
AE1
B
309 337Right-handed alpha
Helix 38
AE2
B
359 370Right-handed alpha
Helix 39
AE3
B
379 386Right-handed 310
Helix 40
AE4
B
396 410Right-handed alpha
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There are 8 sheets in PDB entry 6OXM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
373 374parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
261 264anti-parallel
Strand 3
A
243 248anti-parallel
Strand 4
A
213 217parallel
Strand 5
A
181 185parallel
Strand 6
A
127 131parallel
Strand 7
A
160 163parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 272first strand
Strand 2
A
278 280anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 343first strand
Strand 2
A
349 353anti-parallel
Strand 3
A
388 392anti-parallel
Strand 4
A
376 377anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
373 374parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 107first strand
Strand 2
B
261 264anti-parallel
Strand 3
B
243 248anti-parallel
Strand 4
B
213 217parallel
Strand 5
B
181 185parallel
Strand 6
B
127 131parallel
Strand 7
B
160 163parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 272first strand
Strand 2
B
278 280anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 343first strand
Strand 2
B
349 353anti-parallel
Strand 3
B
388 392anti-parallel
Strand 4
B
376 377anti-parallel
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