Analysis of interatomic Contacts of Structural Units in PDB entry:
6OY9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OY9 entry

There are 4 chains in PDB entry 6OY9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 6	PHE 350
B	SER 2	ASN 340
G	ASP 8	LEU 67
R	MET 1	ASN 326

There are 28 helices in PDB entry 6OY9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	27	Right-handed alpha
Helix 2	AA2	A	41	48	Right-handed alpha
Helix 3	AA3	A	203	212	Right-handed 310
Helix 4	AA4	A	237	251	Right-handed alpha
Helix 5	AA5	A	266	271	Right-handed alpha
Helix 6	AA6	A	272	274	Right-handed 310
Helix 7	AA7	A	291	305	Right-handed alpha
Helix 8	AA8	A	327	336	Right-handed alpha
Helix 9	AA9	A	339	348	Right-handed alpha
Helix 10	AB1	B	3	23	Right-handed alpha
Helix 11	AB2	B	29	34	Right-handed alpha
Helix 12	AB3	G	10	26	Right-handed alpha
Helix 13	AB4	G	32	48	Right-handed alpha
Helix 14	AB5	G	49	51	Right-handed 310
Helix 15	AB6	R	33	65	Right-handed alpha
Helix 16	AB7	R	73	89	Right-handed alpha
Helix 17	AB8	R	91	100	Right-handed alpha
Helix 18	AB9	R	106	141	Right-handed alpha
Helix 19	AC1	R	150	167	Right-handed alpha
Helix 20	AC2	R	195	198	Right-handed 310
Helix 21	AC3	R	199	211	Right-handed alpha
Helix 22	AC4	R	212	235	Right-handed alpha
Helix 23	AC5	R	240	266	Right-handed alpha
Helix 24	AC6	R	266	278	Right-handed alpha
Helix 25	AC7	R	286	288	Right-handed 310
Helix 26	AC8	R	289	297	Right-handed alpha
Helix 27	AC9	R	298	300	Right-handed 310
Helix 28	AD1	R	313	318	Right-handed alpha

There are 9 sheets in PDB entry 6OY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	195	first strand
Strand 2	A	30	34	parallel
Strand 3	A	217	218	parallel
Strand 4	A	260	261	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	50	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	330	anti-parallel
Strand 4	B	317	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	79	83	anti-parallel
Strand 4	B	89	93	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	112	114	anti-parallel
Strand 3	B	121	124	anti-parallel
Strand 4	B	135	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	167	170	anti-parallel
Strand 4	B	175	179	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	251	254	anti-parallel
Strand 4	B	260	263	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	296	298	anti-parallel
Strand 4	B	304	306	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	4	5	first strand
Strand 2	R	10	11	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OY9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OY9