Analysis of interatomic Contacts of Structural Units in PDB entry:
6OYA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OYA entry

There are 5 chains in PDB entry 6OYA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 6	PHE 350
B	LEU 4	ASN 340
G	LEU 9	LYS 68
N	GLN 1	SER 128
R	MET 1	ASN 326

There are 25 helices in PDB entry 6OYA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	27	Right-handed alpha
Helix 2	AA2	A	41	46	Right-handed alpha
Helix 3	AA3	A	207	212	Right-handed 310
Helix 4	AA4	A	239	250	Right-handed alpha
Helix 5	AA5	A	266	274	Right-handed alpha
Helix 6	AA6	A	292	304	Right-handed alpha
Helix 7	AA7	A	326	348	Right-handed alpha
Helix 8	AA8	B	5	26	Right-handed alpha
Helix 9	AA9	B	29	34	Right-handed alpha
Helix 10	AB1	G	16	25	Right-handed alpha
Helix 11	AB2	G	32	47	Right-handed alpha
Helix 12	AB3	G	48	51	Right-handed 310
Helix 13	AB4	R	14	18	Right-handed 310
Helix 14	AB5	R	27	31	Right-handed 310
Helix 15	AB6	R	33	65	Right-handed alpha
Helix 16	AB7	R	73	89	Right-handed alpha
Helix 17	AB8	R	89	101	Right-handed alpha
Helix 18	AB9	R	106	140	Right-handed alpha
Helix 19	AC1	R	149	169	Right-handed alpha
Helix 20	AC2	R	199	211	Right-handed alpha
Helix 21	AC3	R	212	235	Right-handed alpha
Helix 22	AC4	R	242	263	Right-handed alpha
Helix 23	AC5	R	265	278	Right-handed alpha
Helix 24	AC6	R	284	307	Right-handed alpha
Helix 25	AC7	R	312	322	Right-handed alpha

There are 13 sheets in PDB entry 6OYA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	31	first strand
Strand 2	A	192	196	parallel
Strand 3	A	181	183	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	216	218	parallel
Strand 3	A	259	261	parallel
Strand 4	A	315	316	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	330	anti-parallel
Strand 4	B	317	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	61	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	79	83	anti-parallel
Strand 4	B	88	91	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	135	139	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	151	first strand
Strand 2	B	156	159	anti-parallel
Strand 3	B	168	170	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	220	223	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	234	first strand
Strand 2	B	240	242	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	277	first strand
Strand 2	B	286	289	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	125	126	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	45	51	first strand
Strand 2	N	34	39	anti-parallel
Strand 3	N	93	98	anti-parallel
Strand 4	N	122	123	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	4	5	first strand
Strand 2	R	10	11	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OYA

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OYA