Analysis of interatomic Contacts of Structural Units in PDB entry:
6OYC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OYC entry

There are 3 chains in PDB entry 6OYC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	TYR 514
B	SER 2	GLU 518
C	SER 2	THR 318

There are 48 helices in PDB entry 6OYC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	44	Right-handed alpha
Helix 2	AA2	A	58	66	Right-handed alpha
Helix 3	AA3	A	76	81	Right-handed alpha
Helix 4	AA4	A	92	96	Right-handed 310
Helix 5	AA5	A	194	200	Right-handed 310
Helix 6	AA6	A	207	224	Right-handed alpha
Helix 7	AA7	A	238	243	Right-handed alpha
Helix 8	AA8	A	261	268	Right-handed alpha
Helix 9	AA9	A	268	274	Right-handed alpha
Helix 10	AB1	A	282	293	Right-handed alpha
Helix 11	AB2	A	310	315	Right-handed 310
Helix 12	AB3	A	328	345	Right-handed alpha
Helix 13	AB4	A	359	376	Right-handed alpha
Helix 14	AB5	A	377	378	Right-handed 310
Helix 15	AB6	A	379	383	Right-handed 310
Helix 16	AB7	A	413	421	Right-handed alpha
Helix 17	AB8	A	435	446	Right-handed alpha
Helix 18	AB9	A	469	471	Right-handed 310
Helix 19	AC1	A	472	482	Right-handed alpha
Helix 20	AC2	A	483	503	Right-handed alpha
Helix 21	AC3	A	504	513	Right-handed alpha
Helix 22	AC4	B	15	19	Right-handed 310
Helix 23	AC5	B	32	34	Right-handed 310
Helix 24	AC6	B	35	53	Right-handed alpha
Helix 25	AC7	B	71	81	Right-handed 310
Helix 26	AC8	B	95	105	Right-handed alpha
Helix 27	AC9	B	114	126	Right-handed alpha
Helix 28	AD1	B	136	138	Right-handed 310
Helix 29	AD2	B	224	228	Right-handed 310
Helix 30	AD3	B	312	319	Right-handed alpha
Helix 31	AD4	B	340	359	Right-handed alpha
Helix 32	AD5	B	361	363	Right-handed 310
Helix 33	AD6	B	371	382	Right-handed alpha
Helix 34	AD7	B	397	404	Right-handed alpha
Helix 35	AD8	B	405	407	Right-handed 310
Helix 36	AD9	B	415	425	Right-handed alpha
Helix 37	AE1	B	428	445	Right-handed alpha
Helix 38	AE2	B	466	474	Right-handed alpha
Helix 39	AE3	B	494	515	Right-handed alpha
Helix 40	AE4	C	51	56	Right-handed alpha
Helix 41	AE5	C	80	82	Right-handed 310
Helix 42	AE6	C	170	175	Right-handed alpha
Helix 43	AE7	C	205	219	Right-handed alpha
Helix 44	AE8	C	230	244	Right-handed alpha
Helix 45	AE9	C	257	263	Right-handed alpha
Helix 46	AF1	C	269	282	Right-handed alpha
Helix 47	AF2	C	294	305	Right-handed 310
Helix 48	AF3	C	309	318	Right-handed 310

There are 13 sheets in PDB entry 6OYC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	75	first strand
Strand 2	A	48	52	parallel
Strand 3	A	2	5	parallel
Strand 4	A	229	233	parallel
Strand 5	A	250	255	parallel
Strand 6	A	277	280	parallel
Strand 7	A	297	299	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	111	115	anti-parallel
Strand 3	A	118	125	anti-parallel
Strand 4	A	131	138	anti-parallel
Strand 5	A	141	148	anti-parallel
Strand 6	A	154	161	anti-parallel
Strand 7	A	164	171	anti-parallel
Strand 8	A	177	182	anti-parallel
Strand 9	A	190	192	anti-parallel
Strand 10	A	204	205	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	409	first strand
Strand 2	A	349	354	parallel
Strand 3	A	318	323	parallel
Strand 4	A	426	428	parallel
Strand 5	A	449	451	parallel
Strand 6	A	464	466	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	31	first strand
Strand 2	B	6	11	parallel
Strand 3	B	62	65	parallel
Strand 4	B	86	89	parallel
Strand 5	B	108	110	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	135	first strand
Strand 2	B	238	262	anti-parallel
Strand 3	B	157	174	anti-parallel
Strand 4	B	140	142	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	135	first strand
Strand 2	B	238	262	anti-parallel
Strand 3	B	185	208	anti-parallel
Strand 4	B	215	222	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	135	first strand
Strand 2	B	238	262	anti-parallel
Strand 3	B	185	208	anti-parallel
Strand 4	B	230	232	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	135	first strand
Strand 2	B	238	262	anti-parallel
Strand 3	B	178	180	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	135	first strand
Strand 2	B	238	262	anti-parallel
Strand 3	B	157	174	anti-parallel
Strand 4	B	149	153	anti-parallel
Strand 5	C	22	26	anti-parallel
Strand 6	C	29	33	anti-parallel
Strand 7	C	130	140	anti-parallel
Strand 8	C	4	7	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	142	first strand
Strand 2	B	157	174	anti-parallel
Strand 3	B	149	153	anti-parallel
Strand 4	C	22	26	anti-parallel
Strand 5	C	29	33	anti-parallel
Strand 6	C	130	140	anti-parallel
Strand 7	C	69	78	anti-parallel
Strand 8	C	107	111	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	277	first strand
Strand 2	B	283	289	anti-parallel
Strand 3	B	323	327	anti-parallel
Strand 4	B	297	301	parallel
Strand 5	B	365	370	parallel
Strand 6	B	388	392	parallel
Strand 7	B	452	458	parallel
Strand 8	B	482	487	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	47	first strand
Strand 2	C	118	125	anti-parallel
Strand 3	C	84	91	anti-parallel
Strand 4	C	97	103	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	193	first strand
Strand 2	C	163	168	parallel
Strand 3	C	223	227	parallel
Strand 4	C	248	251	parallel
Strand 5	C	289	291	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OYC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OYC