Analysis of interatomic Contacts of Structural Units in PDB entry:
6OYV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OYV entry

There are 2 chains in PDB entry 6OYV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 51THR 525
B
 PRO 51THR 525
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6OYV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
71 82Right-handed alpha
Helix 2
AA2
A
99 108Right-handed alpha
Helix 3
AA3
A
110 114Right-handed 310
Helix 4
AA4
A
120 126Right-handed alpha
Helix 5
AA5
A
138 157Right-handed alpha
Helix 6
AA6
A
159 184Right-handed alpha
Helix 7
AA7
A
193 211Right-handed alpha
Helix 8
AA8
A
218 244Right-handed alpha
Helix 9
AA9
A
245 250Right-handed 310
Helix 10
AB1
A
252 281Right-handed alpha
Helix 11
AB2
A
291 299Right-handed alpha
Helix 12
AB3
A
318 349Right-handed alpha
Helix 13
AB4
A
349 364Right-handed alpha
Helix 14
AB5
A
371 375Right-handed 310
Helix 15
AB6
A
378 393Right-handed alpha
Helix 16
AB7
A
423 429Right-handed alpha
Helix 17
AB8
A
441 446Right-handed 310
Helix 18
AB9
A
456 460Right-handed 310
Helix 19
AC1
A
465 469Right-handed 310
Helix 20
AC2
A
472 490Right-handed alpha
Helix 21
AC3
B
71 82Right-handed alpha
Helix 22
AC4
B
99 108Right-handed alpha
Helix 23
AC5
B
110 115Right-handed alpha
Helix 24
AC6
B
120 126Right-handed alpha
Helix 25
AC7
B
138 157Right-handed alpha
Helix 26
AC8
B
159 184Right-handed alpha
Helix 27
AC9
B
193 211Right-handed alpha
Helix 28
AD1
B
218 244Right-handed alpha
Helix 29
AD2
B
245 250Right-handed 310
Helix 30
AD3
B
252 281Right-handed alpha
Helix 31
AD4
B
291 299Right-handed alpha
Helix 32
AD5
B
318 349Right-handed alpha
Helix 33
AD6
B
349 364Right-handed alpha
Helix 34
AD7
B
371 375Right-handed 310
Helix 35
AD8
B
378 393Right-handed alpha
Helix 36
AD9
B
423 429Right-handed alpha
Helix 37
AE1
B
441 446Right-handed 310
Helix 38
AE2
B
456 460Right-handed 310
Helix 39
AE3
B
472 490Right-handed alpha
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There are 8 sheets in PDB entry 6OYV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 89first strand
Strand 2
A
92 97anti-parallel
Strand 3
A
419 422parallel
Strand 4
A
401 402anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 409first strand
Strand 2
A
412 414anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
491 494first strand
Strand 2
A
519 522anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 506first strand
Strand 2
A
512 513anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
84 89parallel
Strand 3
B
92 97anti-parallel
Strand 4
B
419 422parallel
Strand 5
B
401 402anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
407 409first strand
Strand 2
B
412 414anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
491 494first strand
Strand 2
B
519 522anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
505 506first strand
Strand 2
B
512 513anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il