Analysis of interatomic Contacts of Structural Units in PDB entry:
6OYZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OYZ entry

There are 8 chains in PDB entry 6OYZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	VAL 2	SER 125
A	TYR 21	LEU 358
G	ASP 1	SER 125
C	VAL 18	LEU 358
F	VAL 2	SER 125
B	ALA 6	LEU 358
H	GLN 3	SER 125
D	TYR 21	LEU 358

There are 66 helices in PDB entry 6OYZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	61	64	Right-handed 310
Helix 2	AA2	E	86	90	Right-handed 310
Helix 3	AA3	A	24	53	Right-handed alpha
Helix 4	AA4	A	78	93	Right-handed alpha
Helix 5	AA5	A	98	124	Right-handed alpha
Helix 6	AA6	A	129	150	Right-handed alpha
Helix 7	AA7	A	173	192	Right-handed alpha
Helix 8	AA8	A	199	219	Right-handed alpha
Helix 9	AA9	A	219	227	Right-handed alpha
Helix 10	AB1	A	234	256	Right-handed alpha
Helix 11	AB2	A	264	282	Right-handed alpha
Helix 12	AB3	A	284	292	Right-handed alpha
Helix 13	AB4	A	292	312	Right-handed alpha
Helix 14	AB5	A	323	331	Right-handed alpha
Helix 15	AB6	A	333	355	Right-handed alpha
Helix 16	AB7	G	61	64	Right-handed 310
Helix 17	AB8	G	86	90	Right-handed 310
Helix 18	AB9	G	109	113	Right-handed 310
Helix 19	AC1	C	18	22	Right-handed 310
Helix 20	AC2	C	24	52	Right-handed alpha
Helix 21	AC3	C	78	93	Right-handed alpha
Helix 22	AC4	C	97	123	Right-handed alpha
Helix 23	AC5	C	129	152	Right-handed alpha
Helix 24	AC6	C	170	172	Right-handed 310
Helix 25	AC7	C	173	193	Right-handed alpha
Helix 26	AC8	C	199	219	Right-handed alpha
Helix 27	AC9	C	219	227	Right-handed alpha
Helix 28	AD1	C	234	256	Right-handed alpha
Helix 29	AD2	C	264	282	Right-handed alpha
Helix 30	AD3	C	284	292	Right-handed alpha
Helix 31	AD4	C	292	310	Right-handed alpha
Helix 32	AD5	C	324	331	Right-handed alpha
Helix 33	AD6	C	333	355	Right-handed alpha
Helix 34	AD7	F	86	90	Right-handed 310
Helix 35	AD8	F	109	113	Right-handed 310
Helix 36	AD9	B	7	12	Right-handed alpha
Helix 37	AE1	B	13	22	Right-handed alpha
Helix 38	AE2	B	24	52	Right-handed alpha
Helix 39	AE3	B	78	93	Right-handed alpha
Helix 40	AE4	B	98	124	Right-handed alpha
Helix 41	AE5	B	129	152	Right-handed alpha
Helix 42	AE6	B	170	192	Right-handed alpha
Helix 43	AE7	B	199	218	Right-handed alpha
Helix 44	AE8	B	219	227	Right-handed alpha
Helix 45	AE9	B	236	256	Right-handed alpha
Helix 46	AF1	B	264	282	Right-handed alpha
Helix 47	AF2	B	284	292	Right-handed alpha
Helix 48	AF3	B	292	312	Right-handed alpha
Helix 49	AF4	B	322	331	Right-handed alpha
Helix 50	AF5	B	333	355	Right-handed alpha
Helix 51	AF6	H	61	64	Right-handed 310
Helix 52	AF7	H	86	90	Right-handed 310
Helix 53	AF8	H	109	113	Right-handed 310
Helix 54	AF9	D	22	52	Right-handed alpha
Helix 55	AG1	D	77	93	Right-handed alpha
Helix 56	AG2	D	99	124	Right-handed alpha
Helix 57	AG3	D	129	152	Right-handed alpha
Helix 58	AG4	D	173	191	Right-handed alpha
Helix 59	AG5	D	199	217	Right-handed alpha
Helix 60	AG6	D	219	227	Right-handed alpha
Helix 61	AG7	D	234	256	Right-handed alpha
Helix 62	AG8	D	264	282	Right-handed alpha
Helix 63	AG9	D	284	292	Right-handed alpha
Helix 64	AH1	D	292	310	Right-handed alpha
Helix 65	AH2	D	323	331	Right-handed alpha
Helix 66	AH3	D	333	357	Right-handed alpha

There are 16 sheets in PDB entry 6OYZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	18	24	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	68	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	120	124	parallel
Strand 3	E	91	99	anti-parallel
Strand 4	E	32	39	anti-parallel
Strand 5	E	46	51	anti-parallel
Strand 6	E	57	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	120	124	parallel
Strand 3	E	91	99	anti-parallel
Strand 4	E	115	116	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	159	first strand
Strand 2	A	167	169	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	18	24	anti-parallel
Strand 3	G	77	82	anti-parallel
Strand 4	G	68	72	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	120	124	parallel
Strand 3	G	91	99	anti-parallel
Strand 4	G	32	39	anti-parallel
Strand 5	G	46	51	anti-parallel
Strand 6	G	57	59	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	120	124	parallel
Strand 3	G	91	99	anti-parallel
Strand 4	G	115	116	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	159	first strand
Strand 2	C	167	168	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	18	24	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	68	72	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	120	124	parallel
Strand 3	F	91	99	anti-parallel
Strand 4	F	32	39	anti-parallel
Strand 5	F	46	51	anti-parallel
Strand 6	F	57	59	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	120	124	parallel
Strand 3	F	91	99	anti-parallel
Strand 4	F	115	116	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	159	first strand
Strand 2	B	167	169	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	68	72	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	120	124	parallel
Strand 3	H	91	99	anti-parallel
Strand 4	H	32	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	120	124	parallel
Strand 3	H	91	99	anti-parallel
Strand 4	H	115	116	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	158	first strand
Strand 2	D	168	169	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OYZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OYZ